View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_26 (Length: 421)
Name: NF14236_low_26
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 33041454 - 33041856
Alignment:
| Q |
1 |
aggaattgaattaggcaaaacaacattcggaaaaggaacacaaggtgcagttaaattgggataaggattggaaggaaaaagtgtcttcatggaatatgtg |
100 |
Q |
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| T |
33041454 |
aggaattgaattaggcaaaacaacattcggaaaaggaacacgaggtgcagttaaattgggataaggattggaaggaaaaagtgtcttcatggaatatgtg |
33041553 |
T |
|
| Q |
101 |
aaatgatctagagaacaattcataaactttgtaaactttatagccacgggctgccaacaaagacgcatgagttagctctttgtgtgaatttgttgcaatg |
200 |
Q |
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| T |
33041554 |
aaatgatctagagaacaattcataaactttgtaaactttatagccacgggctgccaacaaagacgcatgagttagctctttgtgtgaatttgttgcaatg |
33041653 |
T |
|
| Q |
201 |
tcattgaggtataatagatatgtagcacatacaaccaaaaacgttgaaatcagcgtatagaggcaatttatcaatcacaaactcaaaacgagactttcct |
300 |
Q |
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| T |
33041654 |
tcgttgaggtataatagatatgtagcacatacaaccaaaaacgtcgaaatcagcgtatagaggcaatttatcaaacacaaactcaaaacgagactttcct |
33041753 |
T |
|
| Q |
301 |
ttgaaaacttggtaggcaagttatcttaaaacataaaggaaattgctacattcaacacgtgttgatgttttctttccacaattgaattatgttcaggtct |
400 |
Q |
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| T |
33041754 |
ttgaaaacttgagaggcaagttatcttaaaacataaaggacattgctacattcaacacgtgttgatgttttctttccaaaattgaattatgttcaggtct |
33041853 |
T |
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| Q |
401 |
ata |
403 |
Q |
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| T |
33041854 |
ata |
33041856 |
T |
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