View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_28 (Length: 399)
Name: NF14236_low_28
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 167 - 384
Target Start/End: Original strand, 19395628 - 19395845
Alignment:
| Q |
167 |
tttgtgaagttatgagattgaagatgtgccaatgtctaatatcgacattaatcacttctattttcttaaattattgacatgtgtctgtgtcatatcttgt |
266 |
Q |
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| T |
19395628 |
tttgtgaagttatgagattgaagatgtgccaatgtctaatatcgacattaatcacttctattttcttaaattattgacatgtgtctgtgtcatatcttgt |
19395727 |
T |
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| Q |
267 |
gtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatgtgtctggataaattatagaataatta |
366 |
Q |
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| T |
19395728 |
gtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatgtgtctggataaattatagaataatta |
19395827 |
T |
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| Q |
367 |
ttggttcaagtcattctg |
384 |
Q |
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| T |
19395828 |
ttggttcaagtcattctg |
19395845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 19395531 - 19395631
Alignment:
| Q |
1 |
ttgaaatgtaaaaaataaggcatcgcataagtagcaaagcatcactcatgtaattttaacctttgagacaaacatgaggacatgttgacattgatgactt |
100 |
Q |
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| T |
19395531 |
ttgaaatgtaaaaaataaggcatcgcataagtagcaaaacatcactcatgtaattttaacc-ttgagacaaacatgaggacatgttgacattgatgactt |
19395629 |
T |
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| Q |
101 |
tg |
102 |
Q |
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|| |
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| T |
19395630 |
tg |
19395631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 19383220 - 19383304
Alignment:
| Q |
47 |
catgtaattttaacctttgagacaaacatgaggacatgttgacattgatgactttgaaatgatagtttgagttgagttatggtttaa |
133 |
Q |
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| T |
19383220 |
catgtaattttaacct--gagacaaacatgaggacatgttgacattgatgactttgaaatgatagtttgagttgtgttatggtttaa |
19383304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 18871349 - 18871220
Alignment:
| Q |
252 |
tgtgtcatatcttgtgtctaagtatgtgtcagtgattgatagttatatcgcttccagtgaagtgaagcactactccgatgaaatttatgtgtctggataa |
351 |
Q |
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| T |
18871349 |
tgtgtcatgtcttatgtatatgtatgtgcctgtgattgaaagatatgccccttccagtgaagtgaagcagtactccgatgaaatttatgtgtctggataa |
18871250 |
T |
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| Q |
352 |
att-atagaataattattggttcaagtcat |
380 |
Q |
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| T |
18871249 |
attaaaagaataataattggttcaagtcat |
18871220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 19402098 - 19402205
Alignment:
| Q |
63 |
ttgagacaaacatgaggacatgttgacattgatgactttgaaatgatagtttgagttgagttatggtttaaactataaattcaactcttacatcgaagtt |
162 |
Q |
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| T |
19402098 |
ttgagacagacttgaagacatattgttatagatgacttttaatggatagtttgagttgagttatggttgaaactataaactaaaaacttacattgaaatt |
19402197 |
T |
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| Q |
163 |
tatatttg |
170 |
Q |
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|||||||| |
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| T |
19402198 |
tatatttg |
19402205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 18871407 - 18871377
Alignment:
| Q |
211 |
acattaatcacttctattttcttaaattatt |
241 |
Q |
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| T |
18871407 |
acattaatcacttctattttcttaaattatt |
18871377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 18871600 - 18871571
Alignment:
| Q |
48 |
atgtaattttaacctttgagacaaacatga |
77 |
Q |
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| T |
18871600 |
atgtaattttaacctttgagacaaacatga |
18871571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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