View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_low_29 (Length: 397)
Name: NF14236_low_29
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 378
Target Start/End: Original strand, 45241455 - 45241810
Alignment:
| Q |
23 |
atgttaatacatgcaatgtggcaggaatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaggacaaaaaacatactaggtatata |
122 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241455 |
atgttaaaacatgcaatgtagcagggatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaggacaaaaaacatactaggtatata |
45241554 |
T |
|
| Q |
123 |
tgcccgaagaaagaattaaaaccttttaaaagtcattcctttaaacatgcaatattaattgcatccgtagcaaactaaaagaagattgctccatctagac |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241555 |
tgcccgaagaaagaattaaaaccttttaacagtcattcctttaaacatgcaatattaattgcatccgtagcaaactaaaagaagattgctccatctagac |
45241654 |
T |
|
| Q |
223 |
accaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcagcttcaatattgacaactaaattgat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
45241655 |
accaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcatcttcaatattgacatctaaattgat |
45241754 |
T |
|
| Q |
323 |
ggtgatatgatgctcaagcttcatgtgccatgccaaattttttgcagcaaaaaata |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45241755 |
ggtgatatgatgctcaagcttcatgtgccatgccaaattttttgcagcgaaaaata |
45241810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 45219255 - 45219543
Alignment:
| Q |
16 |
gttgttaatgttaatacatgcaatgtggcaggaatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaggacaaaa--aacatact |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
45219255 |
gttgttaatgttaaaacatgcaatgtggcagggatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaagaaaaaaaaaacatact |
45219354 |
T |
|
| Q |
114 |
aggtatatatgcccgaagaaagaattaaaaccttttaaaagtcattcctttaaacatgcaatattaattgcatccgtagcaaactaaaagaagattgctc |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| | ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45219355 |
aggtatatatgcccaaagaaagaattaaaaacttttaacaatcattcctttacacatggaatattaattgcatccatagcaaactaaaagaagattgctc |
45219454 |
T |
|
| Q |
214 |
catctagacaccaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcagcttca |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
45219455 |
catctagacaccaaaatcatttactaagtctacatgcttgactcgttttatagttcacaaacacaaaggttctaaatcaatcaacttca |
45219543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 39426791 - 39426897
Alignment:
| Q |
239 |
aagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcagcttcaatattgacaactaaattgatggtgatatgatgctca |
338 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| | || || ||| | || ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39426791 |
aagtctacatgattgcctcattttagagttcacaaacacagattttctagatcgaccattttcaatattgacatttaaattgatggtgatatgatgctca |
39426890 |
T |
|
| Q |
339 |
agcttca |
345 |
Q |
| |
|
||||||| |
|
|
| T |
39426891 |
agcttca |
39426897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 9287490 - 9287581
Alignment:
| Q |
247 |
atgcttgcctcattttatagttcacaaacacaaaggttataaatcaatcagcttcaatattgacaactaaattgatggtgatatgatgctca |
338 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| || |||||||| || |||||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
9287490 |
atgcttgcctcactttagagttcacaaacacaaatattttaaatcaaccattttcaattttgacatctaaattgattgtgatatgatgctca |
9287581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 332
Target Start/End: Original strand, 9300763 - 9300899
Alignment:
| Q |
190 |
tagcaaactaaaagaagattgctccatctagacaccaaaaacatttactaagtctacatgcttgcctcattttatagttcacaaacacaaaggttataaa |
289 |
Q |
| |
|
|||||||| |||| |||||||| ||||| || ||||||| |||| |||||| ||||||||||||||||| |||||||||||||||| || |||| |
|
|
| T |
9300763 |
tagcaaaccaaaaagagattgctgcatctggataccaaaatcatt-actaag-----atgcttgcctcattttagagttcacaaacacaaattttttaaa |
9300856 |
T |
|
| Q |
290 |
tcaatcagcttcaatattgacaactaaattgatggtgatatga |
332 |
Q |
| |
|
|| | || ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
9300857 |
tcgaccattttcaatattgacatctaaattgactgtgatatga |
9300899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 10346612 - 10346713
Alignment:
| Q |
247 |
atgcttgcctcattttatagttcacaaacaca---aaggttataaatcaatcagcttcaatattgacaactaaattgatggtgatatgatgctcaagctt |
343 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || || ||||| | || ||| ||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
10346612 |
atgcttgcctcattttagagttcacaaacacatacaaattttcaaatcgaccattttcgatattgacatctaaattgatggtgatatgatgctcatgctt |
10346711 |
T |
|
| Q |
344 |
ca |
345 |
Q |
| |
|
|| |
|
|
| T |
10346712 |
ca |
10346713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 10334661 - 10334706
Alignment:
| Q |
299 |
ttcaatattgacaactaaattgatggtgatatgatgctcaagcttc |
344 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
10334661 |
ttcaatattgacatctacattgatggtgatatgatgctcatgcttc |
10334706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 10351082 - 10351184
Alignment:
| Q |
247 |
atgcttgcctcattttatagttcacaaacaca----aaggttataaatcaatcagcttcaatattgacaactaaattgatggtgatatgatgctcaagct |
342 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| || || |||||| | || ||||||||||||| ||| |||||||||||||||||| ||| ||| |
|
|
| T |
10351082 |
atgcttggctcattttagagttcacaaacacatacaaattttttaaatcgaccattttcaatattgacatctacattgatggtgatatgatgatcatgct |
10351181 |
T |
|
| Q |
343 |
tca |
345 |
Q |
| |
|
||| |
|
|
| T |
10351182 |
tca |
10351184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 249 - 375
Target Start/End: Complemental strand, 10857117 - 10856990
Alignment:
| Q |
249 |
gcttgcctcattttatagttcacaaacacaaaggttataaatcaatcagcttcaatattgacaactaaattgatggtgatatgatgctcaagcttcatgt |
348 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || |||||| | || || |||||| ||| ||||||||| |||||||||||||||| |||| | | |
|
|
| T |
10857117 |
gcttgcctcattttagagttcacaaacacaaattttttaaatcgaccatattgaatatttacatctaaattgaaggtgatatgatgctcatgctttacat |
10857018 |
T |
|
| Q |
349 |
gcc-atgccaaattttttgcagcaaaaa |
375 |
Q |
| |
|
||| |||||||| | |||||||| |||| |
|
|
| T |
10857017 |
gcctatgccaaaatctttgcagccaaaa |
10856990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 26573873 - 26573973
Alignment:
| Q |
247 |
atgcttgcctcattttatagttcacaaaca--caaaggttataaatcaatcagcttcaatattgacaactaaattgatggtgatatgatgctcaagcttc |
344 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| || ||||| || ||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
26573873 |
atgcttgcctcattttagagttcacaaacatacaaattttttaaattgcccaatttcaatattgacatctacattgatggtgatatgatgctcaagcttc |
26573972 |
T |
|
| Q |
345 |
a |
345 |
Q |
| |
|
| |
|
|
| T |
26573973 |
a |
26573973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 560526 - 560559
Alignment:
| Q |
305 |
attgacaactaaattgatggtgatatgatgctca |
338 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
560526 |
attgacatctaaattgatggtgatatgatgctca |
560559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 36223480 - 36223532
Alignment:
| Q |
129 |
aagaaagaattaaaaccttttaaaagtcattcctttaaacatgcaatattaatt |
182 |
Q |
| |
|
|||||||||||||||||| || | |||| |||||||||||||||||||||||| |
|
|
| T |
36223480 |
aagaaagaattaaaacctactaca-gtcactcctttaaacatgcaatattaatt |
36223532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University