View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_31 (Length: 390)
Name: NF14236_low_31
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_31 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 4487891 - 4487533
Alignment:
| Q |
17 |
gtatgatattaaaacatgatagtgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaag |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487891 |
gtatgatattaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaaa |
4487792 |
T |
|
| Q |
117 |
ttttctgatgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggtttta |
215 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487791 |
ttttctgatgcattaaaatatgatagcaatttttttgtttttaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggtttta |
4487692 |
T |
|
| Q |
216 |
gggatctttcaaaacttccaacgctatttcagaggtagttattcccttcaatttcattttttggtttgtatgtcaaaactgaaccagctggttttataca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4487691 |
gggatctttcaaaacttccaacgctatttcagaggtagttattcccttcaatttcattttttggtttgtatgtcaaaactgaaccacctggttttataca |
4487592 |
T |
|
| Q |
316 |
aaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaa |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487591 |
aaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaa |
4487533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 22067391 - 22067022
Alignment:
| Q |
17 |
gtatgatattaaaacatgatagtgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaag |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| |
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| T |
22067391 |
gtatgatattaaaacatgatagcgatttttgatgaagaacataaaatctgattggtaggcatgttttctttttcagatcggaaatcttatttccttcaaa |
22067292 |
T |
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| Q |
117 |
ttttctgatgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggtttta |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22067291 |
ttttctgatgcattaaaatatgatagcaattattctgtttctaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggaggtttta |
22067192 |
T |
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| Q |
216 |
gggatctttcaaaacttccaacgctatttcagaggtagttattcccttcaatt-----------tcattttttggtttgtatgtcaaaactgaaccagct |
304 |
Q |
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| T |
22067191 |
gggatctttcaaaacttccaacgctgtttcagaggtagttattcccttcaatttcattttttaatcattttttggtttgtatgtcaaaactgaaccagcc |
22067092 |
T |
|
| Q |
305 |
ggttttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaa |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22067091 |
ggttttatacaaaaactggatttgttttggtgaattagttaagcttgttttgaaccattgcatgtattaa |
22067022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 19023489 - 19023123
Alignment:
| Q |
20 |
tgatattaaaacatgatagtgatttttgatgaagaacataaaatctgattggtaggcatattttctttctcagatcgaaaatcgtatttccttcaagttt |
119 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| ||| |
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| T |
19023489 |
tgatattaaatcatgatagcgatttttgatgaagaacataaaatctgattggtaggcatgttttctttttcagatcggaaatcttatttccttcaaattt |
19023390 |
T |
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| Q |
120 |
tctgatgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggaggttttaggg |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19023389 |
tctgatgcattaaaatatgatagcaatttttctgtttctaaatgtatgatatctttttcaggttatgaaagtgaagttaatttaggaggaggttttaggg |
19023290 |
T |
|
| Q |
219 |
atctttcaaaacttccaacgctatttcagaggtagttattcccttcaatt-----------tcattttttggtttgtatgtcaaaactgaaccagctggt |
307 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
19023289 |
atctttcaaaacttccaacgctgtttcaaaggtagttattcccttcaatttcattttttaatcattttttggtttgtatgtcaaaactgaaccagccggt |
19023190 |
T |
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| Q |
308 |
tttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaa |
374 |
Q |
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| T |
19023189 |
tttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtattaa |
19023123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 22621701 - 22621327
Alignment:
| Q |
17 |
gtatgatattaaaacatgatagtgatttttgatgaagaacataaaatctgattggtaggcata------ttttctttctcagatcgaaaatcgtatttcc |
110 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||| ||||| | ||||||| |||| ||| ||||||| ||||| ||||||| |
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| T |
22621701 |
gtatgatattaaaacatgatagcgaattttgatgaagaacataaaatttgattagcaggcatagtttttttttttttttcagatctgaaatcttatttcc |
22621602 |
T |
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| Q |
111 |
ttcaagttttctgatgcattaaaatatgatagcaannnnnnngtttctaaatgtatgatat-tttttcaggtcatgaaagtgaagttaatttaggaggag |
209 |
Q |
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|||| ||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22621601 |
ttcatatttcctgatgcattaaaatatgatagcgatttttctatttctaaatgtatgatatctttttcaggtcatgaaagtgaagttaatttaggaggag |
22621502 |
T |
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| Q |
210 |
gttttagggatctttcaaaacttccaacgctatttcagaggtagttattcccttcaatttcatt------------ttttggtttgtatgtcaaaactga |
297 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22621501 |
gttttagggatctttcaaaacttccaacgttgtttcagaggtagttattcccttcaatttcatttttttaataattttttggtttgtatgtcaaaactga |
22621402 |
T |
|
| Q |
298 |
accagctggttttatacaaaaactggatttgttttggtgaattagttaagctggttttgaaccattgcatgtatt |
372 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||| |
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| T |
22621401 |
accagctggttttatacaaaaactggatttctttttgtgtattagttaagttggttttgaaccattgcatgtatt |
22621327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 13246 - 13286
Alignment:
| Q |
43 |
ttttgatgaagaacataaaatctgattggtaggcatatttt |
83 |
Q |
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| T |
13246 |
ttttgatgaagaacataaaatctgattggtaggcatatttt |
13286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 43255134 - 43255044
Alignment:
| Q |
176 |
tcaggtcatgaaagtgaagttaatttaggaggaggttttag-ggatctttcaaaacttccaacgctatttcagaggtagttattcccttca |
265 |
Q |
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|||||||||||||||||||||||||||||||||| | || | | | | |||| ||||||||| || |||||||||||||| ||||||||| |
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| T |
43255134 |
tcaggtcatgaaagtgaagttaatttaggaggagatattggagcaacattcagtacttccaacactgtttcagaggtagtttttcccttca |
43255044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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