View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_34 (Length: 373)
Name: NF14236_low_34
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 356
Target Start/End: Original strand, 29443869 - 29444205
Alignment:
| Q |
20 |
agttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443869 |
agttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtag |
29443968 |
T |
|
| Q |
120 |
gctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttc |
219 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29443969 |
gctaaataaataatatttgtatgagttggtatttttttccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttc |
29444068 |
T |
|
| Q |
220 |
aaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444069 |
aaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaa |
29444168 |
T |
|
| Q |
320 |
aatatttattttttgatcactattcttttgtgatatt |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
29444169 |
aatatttattttttgatcactattcttttgtgatatt |
29444205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 29422856 - 29422520
Alignment:
| Q |
20 |
agttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtag |
119 |
Q |
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|||||||| |||| ||||||||||| ||||||||||| ||| ||||||||| |||||| || |||||| |||||||||||||||| ||||| ||||| |
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| T |
29422856 |
agttgacccagtgactagctaaactccaccctcctctc--gagtaaaaaatatcaagttaaaccaaagga-tttgcaggattcctttgctttagaagtat |
29422760 |
T |
|
| Q |
120 |
gctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaa-tcctcactatga-----------tgtcaaacttatttcgaaatg |
207 |
Q |
| |
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| ||| ||||||||||| |||||||||||| || |||||||||| ||| |||| |||||| |||||||||||||||| |||| |
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| T |
29422759 |
gttaattaaataatattggtatgagttggtctttttttccttcattagttgtgaaatccttgctatgaaataattattttgtcaaacttatttcggaatg |
29422660 |
T |
|
| Q |
208 |
ttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtat |
307 |
Q |
| |
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|||||||| ||||||| |||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
29422659 |
ttgagactattcaaccctgtcgtggtatctatgt------ggataagaacattgttgggtagaaatttgcctgcaatgaaattactcaaaatctatgtac |
29422566 |
T |
|
| Q |
308 |
aagtcctttcaaaatatttattttttgatcactattcttttgtgat |
353 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29422565 |
aagtcctttcaaaatatttatttttttatcactattcttttgtgat |
29422520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 187 - 353
Target Start/End: Original strand, 29454043 - 29454209
Alignment:
| Q |
187 |
tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga |
286 |
Q |
| |
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|||||||||||||||| ||||||||| || ||| ||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29454043 |
tgtcaaacttatttcggaatgttgagtctattccaccctgttgtggtatctatgtatttaaggataagaacattgttgtgtagaaatttgcctgcaatga |
29454142 |
T |
|
| Q |
287 |
atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgat |
353 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29454143 |
aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgat |
29454209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 29468362 - 29468637
Alignment:
| Q |
20 |
agttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtag |
119 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
29468362 |
agttgaccttgtgactggctaaactcaaccct---------aggaaaaaatattaagttagacaaaagga-tttgcaggattcctttactttaaatgtag |
29468451 |
T |
|
| Q |
120 |
gctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttc |
219 |
Q |
| |
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| | | || |||||||| |||||||||||| || ||||| |||||| |||||||||| |||||||||||||||| |||| ||||| |
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| T |
29468452 |
gttgagtatataatattggtatgagttggtctttttttccttcattggttgag-atcctcactacgatgtcaaacttattttgaaa---------tgttc |
29468541 |
T |
|
| Q |
220 |
aaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaa |
319 |
Q |
| |
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||| |||| | | |||||||| |||||| ||||||||||||||||||||||| |||||||| ||| || |||||||||||||| || |||||| |
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| T |
29468542 |
gaccctgtcatggcatctatgt------ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaatctatgtataattcatttcaa |
29468635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 29453922 - 29453990
Alignment:
| Q |
79 |
agacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggt |
149 |
Q |
| |
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||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
29453922 |
agacaaaagga-tttgcaggattc-tttaatttaaaagtaggttaaataaataatattggtatgagttggt |
29453990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 29473678 - 29473751
Alignment:
| Q |
248 |
ggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaa |
321 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||| ||| || |||||||||||||| || |||||||| |
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| T |
29473678 |
ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaatctatgtataattcatttcaaaa |
29473751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 356
Target Start/End: Original strand, 12019598 - 12019750
Alignment:
| Q |
204 |
aatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctat |
303 |
Q |
| |
|
|||||||||||| ||| ||| ||| || |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||| |||||| |||||||| |
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|
| T |
12019598 |
aatgttgagactattccaccctgttgtggtatctgtgtatttaaggataagaatattgttgtgtagaaatttacctgcaatgaa-ttactccaaatctat |
12019696 |
T |
|
| Q |
304 |
gtataagtcctttcaaaatatttat-tttttgatcactattcttttgtgatatt |
356 |
Q |
| |
|
|||||| |||||||||||||||||| || || |||||||||| ||||||||||| |
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|
| T |
12019697 |
gtataattcctttcaaaatatttatattatttatcactattcatttgtgatatt |
12019750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 356
Target Start/End: Original strand, 12006934 - 12007104
Alignment:
| Q |
187 |
tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga |
286 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||| ||| ||| || |||||| ||||||||||||||| || |||||| ||||||||||| ||| ||||| |
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|
| T |
12006934 |
tgtcaaacttatttcaaaatgttgagattattccaccctgttgtggtatctgtgtatttaaggataagaatattgttctgtagaaatttacctttaatga |
12007033 |
T |
|
| Q |
287 |
atttactcaaaatctatgtataagtcctttcaaaatatttat-tttttgatcactattcttttgtgatatt |
356 |
Q |
| |
|
| |||||| || ||||||||||| |||||||||||||||||| || || |||||||||| | ||||||||| |
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|
| T |
12007034 |
aattactccaactctatgtataattcctttcaaaatatttatattatttatcactattcatctgtgatatt |
12007104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 11988111 - 11988229
Alignment:
| Q |
187 |
tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtg-tagaaatttgcctgcaatg |
285 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||| ||| || |||||| |||| ||||||||| ||| |||||||| ||||||||| | ||||||| |
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| T |
11988111 |
tgtcaaacttatttcgaaatgttgtgactattctaccctgttgtggtatctgtgta--taaggataagaacgttgttgtgttagaaattttcttgcaatg |
11988208 |
T |
|
| Q |
286 |
aatttactcaaaatctatgta |
306 |
Q |
| |
|
|| | |||| ||||| ||||| |
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|
| T |
11988209 |
aaataactccaaatcaatgta |
11988229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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