View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_37 (Length: 355)
Name: NF14236_low_37
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 133 - 337
Target Start/End: Original strand, 39846499 - 39846703
Alignment:
| Q |
133 |
ctagaatatacaatataatgcaatccaatatcttcaccaaccactataaataagaggtgatgaaatctcaaattccacaaaggaaaacaaaacacaaagc |
232 |
Q |
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| T |
39846499 |
ctagaatatgcaatataatgcaatccaatatcttcaccaaccactataaataagaggtgatgaaatctcaaattccaccaaggaaaacaaaacacaaagc |
39846598 |
T |
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| Q |
233 |
attcctagttttgtaacattttatcaagtaatggatagagtgaaggatttggcatcaaagaaagctgcagttatattcacaaagagttcatgctacatgt |
332 |
Q |
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| T |
39846599 |
attcctacttttgtaacaatttatcaagtaatggatagagtgaaggatttggcatcaaagaaagctgcagttatattcacaaagagttcatgctacatgt |
39846698 |
T |
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| Q |
333 |
gtcac |
337 |
Q |
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||||| |
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| T |
39846699 |
gtcac |
39846703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 39846374 - 39846431
Alignment:
| Q |
13 |
caaaggttcaagggaatttgaatttcccttatccaaacaaatatcttatggaacttgc |
70 |
Q |
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| T |
39846374 |
caaaggttcaagggaatttgaatttcccttatccaaacaaatatcttatggaacttgc |
39846431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 44005365 - 44005288
Alignment:
| Q |
259 |
agtaatggatagagtgaaggatttggcatcaaagaaagctgcagttatattcacaaagagttcatgctacatgtgtca |
336 |
Q |
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| T |
44005365 |
agtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttacaaagagttcatgttacatgtgtca |
44005288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 44009291 - 44009214
Alignment:
| Q |
259 |
agtaatggatagagtgaaggatttggcatcaaagaaagctgcagttatattcacaaagagttcatgctacatgtgtca |
336 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
44009291 |
agtaatggatagagtaaaggatttggcatcaaagaaagctgcagttatatttacaaagagttcatgttacatgtgtca |
44009214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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