View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_48 (Length: 283)
Name: NF14236_low_48
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 1530287 - 1530044
Alignment:
| Q |
11 |
catcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaatgta |
110 |
Q |
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| T |
1530287 |
catcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaatgta |
1530188 |
T |
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| Q |
111 |
ttgtttcatataattaacattacattcattcatctattgatccaaaaattattctttcatttatctagatgcaactccttcaaaatatatggtggttttt |
210 |
Q |
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| T |
1530187 |
ttgtttcatataattaacattacattcattcatgtattgatccaaaaattattcttccatttatttacgtgcaactccttcaaaatatatggtggttttt |
1530088 |
T |
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| Q |
211 |
tatttgtaagtgggcttccaaagtattataatcggattgctatt |
254 |
Q |
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| T |
1530087 |
tatttgtaagtgggcttccaaagtattataatcggattgctatt |
1530044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 1516057 - 1515896
Alignment:
| Q |
11 |
catcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaatgta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1516057 |
catcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaatgta |
1515958 |
T |
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| Q |
111 |
ttgtttcatataattaacattacattcattcatctattgatccaaaaattattctttcattt |
172 |
Q |
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| T |
1515957 |
ttgtttcatataattaacattacattcattcatgtattgatccaaaaattattctttcattt |
1515896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 7978452 - 7978615
Alignment:
| Q |
18 |
atcatggggtagtagaatgagggccaaaaacaa---tataaccaaagatgatcataataactagt-----------ttcctttccatatgattattttgt |
103 |
Q |
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|||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
7978452 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgt |
7978551 |
T |
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| Q |
104 |
taatgtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctttcat |
170 |
Q |
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|||| |||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||||||| |
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| T |
7978552 |
---tgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcat |
7978615 |
T |
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