View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_49 (Length: 283)
Name: NF14236_low_49
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_49 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 143 - 283
Target Start/End: Complemental strand, 1203242 - 1203088
Alignment:
| Q |
143 |
ctcaaattttcaggcatcgaaagtgtttaagtgcacgaatttgtacatatatcaatttttaggagttcgaattcttacatat-acctag----------- |
230 |
Q |
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| T |
1203242 |
ctcaaattttcaggcatcgaaggtgtttaagtgcatgaatttctacatatatcaatttttaggagttcgaattcttacatataacctagtcaaaagaaaa |
1203143 |
T |
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| Q |
231 |
--tcttacatgtaacaattctggcgcacaaaattgtgaggtcctaaaattaaaac |
283 |
Q |
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| T |
1203142 |
attcttacatataacaattctgacgtacaaaattgtgaggtcctaaaattaaaac |
1203088 |
T |
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