View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_low_52 (Length: 280)

Name: NF14236_low_52
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_low_52
NF14236_low_52
[»] chr4 (7 HSPs)
chr4 (1-206)||(7987359-7987567)
chr4 (210-280)||(7988326-7988396)
chr4 (50-97)||(17512207-17512254)
chr4 (50-97)||(25970106-25970153)
chr4 (48-97)||(23383308-23383357)
chr4 (49-97)||(39429938-39429986)
chr4 (248-280)||(49779961-49779993)
[»] chr7 (6 HSPs)
chr7 (121-206)||(32871029-32871113)
chr7 (121-195)||(36845099-36845175)
chr7 (48-97)||(5064646-5064695)
chr7 (49-97)||(24995851-24995899)
chr7 (49-97)||(29060740-29060788)
chr7 (49-97)||(42607080-42607128)
[»] chr1 (5 HSPs)
chr1 (131-206)||(50267647-50267722)
chr1 (147-206)||(48685469-48685528)
chr1 (49-97)||(38931313-38931361)
chr1 (124-169)||(45597703-45597748)
chr1 (49-97)||(34716423-34716471)
[»] chr5 (4 HSPs)
chr5 (121-195)||(42650832-42650908)
chr5 (51-97)||(4789521-4789567)
chr5 (1-34)||(33247629-33247662)
chr5 (1-37)||(23036068-23036104)
[»] chr8 (1 HSPs)
chr8 (49-97)||(42346106-42346154)
[»] chr3 (4 HSPs)
chr3 (49-97)||(51421676-51421724)
chr3 (157-206)||(28886943-28886992)
chr3 (121-195)||(49161705-49161781)
chr3 (124-169)||(53714566-53714611)
[»] chr2 (5 HSPs)
chr2 (122-195)||(6084947-6085022)
chr2 (49-97)||(7868142-7868190)
chr2 (121-169)||(23875315-23875363)
chr2 (49-97)||(23876064-23876112)
chr2 (49-97)||(36390956-36391004)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7987359 - 7987567
Alignment:
Q  1 cagctgaccccaattagcttgctgtgcatccgtgccttgcagtaaaggaggtggggtttagcatgagaacggggagttgtttctcatcatgggaaagnnn 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| | ||||       
T  7987359 cagctgaccccaattagcttgctgtgcatccgttccttgcagtaaaggaggtggggtttagcatgggaacggggagttgtttcctatcatagaaaag-tt 7987457  T
Q  101 nnnnnggactattagatcat-----gaacataatattatcataatctctcaatactatattatttttacattattccatcacccttgtctctcttccatg 195  Q
         |||||||||||||||     |||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7987458 tttttggactattagatcatgtaaggaacataatattatcatagtctctc-atactatattatttttacactattccatcacccttgtctctcttccatg 7987556  T
Q  196 tcctcactcac 206  Q
    |||||||||||    
T  7987557 tcctcactcac 7987567  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 7988326 - 7988396
Alignment:
Q  210 gccatcttgaaaggatccacacattgaagtaaattttgattgctcaagatcaaattttaaattcaagaaat 280  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7988326 gccaccttgaaaggatctacacattgaagtaaattttgattgctcaagatcaaattttaaattcaagaaat 7988396  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 17512254 - 17512207
Alignment:
Q  50 ggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    |||||||||||||||||||| ||  ||||||||| |||||||||||||    
T  17512254 ggtggggtttagcatgagaatggatagttgtttcccatcatgggaaag 17512207  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 25970106 - 25970153
Alignment:
Q  50 ggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    |||||||||||||||| ||| ||||||||||||| || ||||||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaag 25970153  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 23383308 - 23383357
Alignment:
Q  48 gaggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    |||||||||||||| ||||||| || |||||||||| || ||||||||||    
T  23383308 gaggtggggtttagaatgagaaaggagagttgtttcccaccatgggaaag 23383357  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 39429986 - 39429938
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| ||| || |||||||||| || ||||||||||    
T  39429986 aggtggggtttagcatgggaatggagagttgtttcccaccatgggaaag 39429938  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 49779993 - 49779961
Alignment:
Q  248 attgctcaagatcaaattttaaattcaagaaat 280  Q
    |||||||||||||||||||||||| ||||||||    
T  49779993 attgctcaagatcaaattttaaatccaagaaat 49779961  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 32871113 - 32871029
Alignment:
Q  121 gaacataatattatcataatctctcaatactatattatttttacattattccatcacccttgtctctcttccatgtcctcactcac 206  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  32871113 gaacataatattatcatagtctctcaatactatattatttt-acactattccatcacccttgtctctcttccatgtcctcactcac 32871029  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 36845175 - 36845099
Alignment:
Q  121 gaacataatattatcataatctctcaatactatattatttttacatta--ttccatcacccttgtctctcttccatg 195  Q
    |||||||||||||||||| || ||||| |||| |||||||||||||||  |||||||| |||| ||| || ||||||    
T  36845175 gaacataatattatcatagtccctcaacactagattatttttacattatcttccatcatccttctctttcctccatg 36845099  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 5064695 - 5064646
Alignment:
Q  48 gaggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    |||||||||||||||||| ||| ||| |||| |||| |||||||||||||    
T  5064695 gaggtggggtttagcatgggaatgggaagttctttcccatcatgggaaag 5064646  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24995851 - 24995899
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||| ||| ||| ||||||||||||| || ||||||||||    
T  24995851 aggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaag 24995899  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 29060788 - 29060740
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| ||| ||||| ||||||| || ||||||||||    
T  29060788 aggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaag 29060740  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 42607080 - 42607128
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| ||| ||||| ||||||| || ||||||||||    
T  42607080 aggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaag 42607128  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 50267647 - 50267722
Alignment:
Q  131 ttatcataatctctcaatactatattatttttacattattccatcacccttgtctctcttccatgtcctcactcac 206  Q
    |||||||| |||||| | |||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||    
T  50267647 ttatcatattctctccacactatattatttttacattattacaccacccttgtctctcctccatgtccccactcac 50267722  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 48685469 - 48685528
Alignment:
Q  147 atactatattatttttacattattccatcacccttgtctctcttccatgtcctcactcac 206  Q
    ||||||||||||||||||| |||| || |||||||||||||| ||||||| | |||||||    
T  48685469 atactatattatttttacaatattacaccacccttgtctctcctccatgttcccactcac 48685528  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 38931313 - 38931361
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||||||||    
T  38931313 aggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaag 38931361  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 45597703 - 45597748
Alignment:
Q  124 cataatattatcataatctctcaatactatattatttttacattat 169  Q
    |||| |||||||||| |||||||| | |||||||||||||||||||    
T  45597703 catagtattatcatagtctctcaacattatattatttttacattat 45597748  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 34716423 - 34716471
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| ||| || |||||||||| |||||||| ||||    
T  34716423 aggtggggtttagcatgggaatggagagttgtttcccatcatggaaaag 34716471  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 42650832 - 42650908
Alignment:
Q  121 gaacataatattatcataatctctcaatactatattatttttacatta--ttccatcacccttgtctctcttccatg 195  Q
    |||||||||||||||||| ||| |||| |||| |||||||||||||||  |||||||| |||| ||| || ||||||    
T  42650832 gaacataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctctttcctccatg 42650908  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 4789521 - 4789567
Alignment:
Q  51 gtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||| ||| ||||||||||||| || ||||||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaag 4789567  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33247629 - 33247662
Alignment:
Q  1 cagctgaccccaattagcttgctgtgcatccgtg 34  Q
    |||||||||||||||||||||| |||||||||||    
T  33247629 cagctgaccccaattagcttgccgtgcatccgtg 33247662  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23036068 - 23036104
Alignment:
Q  1 cagctgaccccaattagcttgctgtgcatccgtgcct 37  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  23036068 cagctgaccccaattaacttgccgtgcatccgtgcct 23036104  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 42346154 - 42346106
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| ||| || |||||||||| |||||||||||||    
T  42346154 aggtggggtttagcatgggaatggagagttgtttcccatcatgggaaag 42346106  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 51421724 - 51421676
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||||||||    
T  51421724 aggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaag 51421676  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 28886992 - 28886943
Alignment:
Q  157 atttttacattattccatcacccttgtctctcttccatgtcctcactcac 206  Q
    |||||||||  |||| |||||||||||||||| ||||||||| |||||||    
T  28886992 atttttacaccattctatcacccttgtctctcctccatgtccccactcac 28886943  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 49161781 - 49161705
Alignment:
Q  121 gaacataatattatcataatctctcaatactatattatttttacatta--ttccatcacccttgtctctcttccatg 195  Q
    |||||||||||||||||| ||| |||| |||| |||||||||| ||||  |||||||| |||| ||| || ||||||    
T  49161781 gaacataatattatcatagtctttcaacactagattatttttatattatcttccatcatccttctctttcctccatg 49161705  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 53714566 - 53714611
Alignment:
Q  124 cataatattatcataatctctcaatactatattatttttacattat 169  Q
    |||| |||||||||| |||||||| | |||||||||||||||||||    
T  53714566 catagtattatcatagtctctcaacattatattatttttacattat 53714611  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 6084947 - 6085022
Alignment:
Q  122 aacataatattatcataatctctcaatactatattatttttacatta--ttccatcacccttgtctctcttccatg 195  Q
    ||||||||||||||||| ||| |||| |||| |||||||||||||||  |||||||| |||| ||| || ||||||    
T  6084947 aacataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctctttcatccatg 6085022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 7868190 - 7868142
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||| ||||||||||||| ||||||||||||| || ||||||||||    
T  7868190 aggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaag 7868142  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 23875315 - 23875363
Alignment:
Q  121 gaacataatattatcataatctctcaatactatattatttttacattat 169  Q
    |||||||||||||||||| ||| |||| |||| ||||||||||||||||    
T  23875315 gaacataatattatcatagtctttcaacactagattatttttacattat 23875363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 23876112 - 23876064
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| |||  |||||||||||| || ||||||||||    
T  23876112 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 23876064  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 36390956 - 36391004
Alignment:
Q  49 aggtggggtttagcatgagaacggggagttgtttctcatcatgggaaag 97  Q
    ||||||||||||||||| ||| ||| ||||||||| || ||||||||||    
T  36390956 aggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaag 36391004  T

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