View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_54 (Length: 275)
Name: NF14236_low_54
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 47895073 - 47894902
Alignment:
| Q |
84 |
ctaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaacatctttagcaaaaaagtagagacaaatatcttccttagttacttgagctc |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
47895073 |
ctaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaacatctttagcaaaaaagtagagaccaatatcttccttggttacttgagctc |
47894974 |
T |
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| Q |
184 |
taaattgagatggccagatactcgatcgaggcagttcatctaatgtaataatctctggaaaactggacacaa |
255 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894973 |
taaattgagacggccagatacttgatcgaggcagttcatctaatgtaataatctctggaaaactggacacaa |
47894902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 31220229 - 31220400
Alignment:
| Q |
84 |
ctaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaacatctttagcaaaaaagtagagacaaatatcttccttagttacttgagctc |
183 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
31220229 |
ctaatattgtcattatatatagaaaagaaatgtctaacaaacctattaacatctttagcaaaaaagtagagaccaatatcttccttggttacttgagctc |
31220328 |
T |
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| Q |
184 |
taaattgagatggccagatactcgatcgaggcagttcatctaatgtaataatctctggaaaactggacacaa |
255 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31220329 |
taaattgagacggccagatactcgatcgaggcagttcatctaatgtaataatctctggaaaactggacacaa |
31220400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 84 - 255
Target Start/End: Original strand, 31214474 - 31214645
Alignment:
| Q |
84 |
ctaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaacatctttagcaaaaaagtagagacaaatatcttccttagttacttgagctc |
183 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
31214474 |
ctaatattgtcattatatatagaaaagaaatgtctaacaaacctattaacatctttagcaaaaaagtagagaccaatatcttccttggttacttgagctc |
31214573 |
T |
|
| Q |
184 |
taaattgagatggccagatactcgatcgaggcagttcatctaatgtaataatctctggaaaactggacacaa |
255 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214574 |
taaattgagacggccagatactagatcgaggcagttcatctaatgtaataatctctggaaaactggacacaa |
31214645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31214390 - 31214420
Alignment:
| Q |
1 |
tcaaactactataatgtgtatcatagttgtg |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31214390 |
tcaaactactataatgtgtatcatagttgtg |
31214420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31220145 - 31220175
Alignment:
| Q |
1 |
tcaaactactataatgtgtatcatagttgtg |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31220145 |
tcaaactactataatgtgtatcatagttgtg |
31220175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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