View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_57 (Length: 267)
Name: NF14236_low_57
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_57 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 53000395 - 53000129
Alignment:
| Q |
1 |
ttattataaagacgacataaattgaaaggaaaatgtttgatgatacaaaaaagtcaggcaccaccgtttttcatattctcacattgaatgaaaataaaat |
100 |
Q |
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| T |
53000395 |
ttattataacgacgacataaattgaaaggaaaatgtttgatgatacaaaaaagtcaggcaccaccgtttttcatattctcacattgaatgaaaataaaat |
53000296 |
T |
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| Q |
101 |
cttaaaatgtatttataattggcaagtacttctcattttacaatcccctgttttgtagaaattgagttaagtatatgttttgtcctttaccaaacggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53000295 |
cttaaaatgtatttataattggcaagtacttctcattttacaatcccctgttttgtagaaattgagttaagtatatgttttgtcctttaccaaacggttt |
53000196 |
T |
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| Q |
201 |
gcccttcagggaaactcaataatcatgttgtgaattcatatcaaaactcacacgaaaacaatgattt |
267 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53000195 |
gcccttcggggaaactcaataatcatgttgtgaattcatatcaaaactcacacgaaaataatgattt |
53000129 |
T |
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