View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_59 (Length: 260)
Name: NF14236_low_59
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 1424468 - 1424619
Alignment:
| Q |
105 |
ccgctgctccttggttatttgttctctttggtaagacatcagtcaatatatcaaaaagaggattgatacaatccttcagacaagtt------gaaataaa |
198 |
Q |
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| T |
1424468 |
ccgctgcactttggttatttgttctctttggtaagacatcagtcaatatgtcaaaaagaggattgatacaatccttcagacaagttgaaatagaaataaa |
1424567 |
T |
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| Q |
199 |
aaatgtaagatcttttccgaaggaattggataaaccaacatatacgtctctg |
250 |
Q |
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| T |
1424568 |
aaatgtaagatcttttctgaaggaattggataaaccaacatgtacgtctctg |
1424619 |
T |
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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 1673990 - 1673854
Alignment:
| Q |
115 |
ttggttatttgttctctttggtaagacatcagtcaatatatcaaaaagaggattgatacaatccttcagacaagttgaaataaaaa----atgtaagatc |
210 |
Q |
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| T |
1673990 |
ttggttatttgttctctttggtaagacaccaatcgatatgtcacaaggatgattgattcaacccttcagtcaagatgaaataaaaaaggtatgtaagatc |
1673891 |
T |
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| Q |
211 |
ttttccgaaggaattggataaaccaacatatacgtct |
247 |
Q |
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| T |
1673890 |
ttttcttaaggaattggataaaccaacatgtacgtct |
1673854 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 29443264 - 29443152
Alignment:
| Q |
120 |
tatttgttctctttggtaagacatcagtcaatatatcaaaaagaggattgatacaatccttcagacaagttgaaataaaaaatgtaagatcttttccgaa |
219 |
Q |
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| T |
29443264 |
tatttgttctctttggtaagacatcagtcaatatgtcaaaaggaggattgacccatccgtttagtcaagatgaaataaaaaatgtgagatattttcttaa |
29443165 |
T |
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| Q |
220 |
ggaattggataaa |
232 |
Q |
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| T |
29443164 |
gaaattggataaa |
29443152 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 50057687 - 50057798
Alignment:
| Q |
139 |
gacatcagtcaatatatcaaaaagaggattgatacaatccttcagacaagttgaaataaaaaatgtaagatcttttccgaaggaattggataaaccaaca |
238 |
Q |
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||||||| ||||||| |||||| ||||||||| ||| ||||||| ||| ||||||||| || ||||||||||||| |||||||| |||||||||| | |
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| T |
50057687 |
gacatcaatcaatatgtcaaaagaaggattgattcaacccttcagtgaagatgaaataaacaaggtaagatcttttcttaaggaattagataaaccaaga |
50057786 |
T |
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| Q |
239 |
tatacgtctctg |
250 |
Q |
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| T |
50057787 |
tgtacgtctctg |
50057798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 28095772 - 28095647
Alignment:
| Q |
112 |
tccttggttatttgttctctttggtaagacatcagtcaatatatcaaaaagaggattgatacaatccttcagacaagttgaaataaaaaatgtaagatct |
211 |
Q |
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||||||| |||||||||| || ||||||||||||||||||| |||||| ||| | | || ||| ||||| |||| |||||||||||| || |||||| |
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| T |
28095772 |
tccttggctatttgttctttt--gtaagacatcagtcaatatgtcaaaaggagaaatcattcaactcttcactcaagatgaaataaaaaaggtgagatct |
28095675 |
T |
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| Q |
212 |
tttccgaaggaattggataaaccaacat |
239 |
Q |
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|||| ||| |||||||||||||||||| |
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| T |
28095674 |
tttctcaagcaattggataaaccaacat |
28095647 |
T |
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