View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_60 (Length: 247)
Name: NF14236_low_60
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 37643077 - 37642847
Alignment:
| Q |
3 |
ttatcccaggttcaagctacaatgaccgatcttgatcaaaatcgatttttgtggtttgaaatttgaataactaaaaaaggcattaataaatttgtggtaa |
102 |
Q |
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| T |
37643077 |
ttatcccaagttcaagttacaatgaccaatcttgatcaaaatcgatttttgtggtttgaaatttgaataactaaaaaaagcattaatagatttgcggtaa |
37642978 |
T |
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| Q |
103 |
ttaaactacatagaatgaacatcataatca-ttgatacggtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaaga |
201 |
Q |
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|||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37642977 |
ttaaactacataaaatgaacatcataatcatttgataaggtcaatgtaatgtactataggttttgattcgtatttatttctaactctagagaataaaaga |
37642878 |
T |
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| Q |
202 |
ccgtgtatcaaactttaatgcaccaaagttc |
232 |
Q |
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| T |
37642877 |
ccgtgtatcaaactccaatgcaccaaagttc |
37642847 |
T |
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