View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_61 (Length: 241)
Name: NF14236_low_61
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 24915330 - 24915126
Alignment:
| Q |
18 |
aaaacaaggagaagctgtgattgcaatggatccaaggcttaggagaagttcagcctcaaacaaagctgtacaaaaggttctcaagcttgctttccagtgt |
117 |
Q |
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| T |
24915330 |
aaaacaaggagaagctgtgattgcaatggatccaaggcttaggagaagttcagcctcaaacaaagctgtacaaaaggttctcaagcttgctttccagtgt |
24915231 |
T |
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| Q |
118 |
cttgcacctgtgagacgattgcgtccatcgatgaagaattgtcaagaggttctatgggaaatacggaaagagtttagagacagagtctcttctcgtcctc |
217 |
Q |
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| T |
24915230 |
cttgcacctgtgagacgattgcgtccatcgatgaagaattgtcaagaggttctatgggaaatacggaaagagtttagagacagagtctcttctcgtcctc |
24915131 |
T |
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| Q |
218 |
ctgcc |
222 |
Q |
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||||| |
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| T |
24915130 |
ctgcc |
24915126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 29511013 - 29510964
Alignment:
| Q |
25 |
ggagaagctgtgattgcaatggatccaaggcttaggagaagttcagcctc |
74 |
Q |
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|||||||||||| |||||||||||||||| || || |||||| ||||||| |
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| T |
29511013 |
ggagaagctgtgtttgcaatggatccaagactgagaagaagtccagcctc |
29510964 |
T |
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