View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_62 (Length: 241)
Name: NF14236_low_62
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3322082 - 3322306
Alignment:
| Q |
1 |
ttgttatatttgtctcataatgttgaacaagtttttgaaaatcattaatagctgatttgttgtcacaaaaactttaaacctttatactttatattcaagt |
100 |
Q |
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| T |
3322082 |
ttgttatatttgtctcataatgttgaacaagtttttgaaaattattaatagttgatttgttgtcacaaaaactttaagcctttatactttgtattcaagt |
3322181 |
T |
|
| Q |
101 |
caaacttgagtgaacgtataataattagactctttctttttctatcttattgatctctcgcacgtcatatacagttctgataatataatttgaacgacat |
200 |
Q |
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| T |
3322182 |
gaaacttgagtgaacgtataataattagactctttctttttctattttattgatttctcgcacgccatatacagttctgatgatataatttgaacgatat |
3322281 |
T |
|
| Q |
201 |
aagcatcttataaaaatctccaaaa |
225 |
Q |
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|| ||||| ||||||| |||||||| |
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| T |
3322282 |
aaacatctcataaaaacctccaaaa |
3322306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 45195757 - 45195800
Alignment:
| Q |
183 |
atataatttgaacgacataagcatcttataaaaatctccaaaat |
226 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
45195757 |
atataattcgaacgacataaacatcttataaaaatctccaaaat |
45195800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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