View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_7 (Length: 728)
Name: NF14236_low_7
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 9504034 - 9503561
Alignment:
| Q |
1 |
cagggaaccagtgatcgagaagtaattagtttaaacccccaagatgatccaccatataccacaataatacaagtcctaagcaagttcttggcatcaagta |
100 |
Q |
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| T |
9504034 |
cagggaaccagtgattgagaagtaattagtttaaacccccaagatgatccaccatataccacaataatacaagtcctaagcaagttcttggcatcaagta |
9503935 |
T |
|
| Q |
101 |
cagtgaaaaaacttgtgatcaaatgcaagataacaccataggcgtatgcagcgcttggaggtcaacacagaaatatttgaattgttcaacttctgaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9503934 |
cagtgaaaaaacttgtgatcaaatgcaagataacaccataggcgtatgcagcgcttggaggtcatcacagaaatatttgaattgttcaacttctgaacca |
9503835 |
T |
|
| Q |
201 |
atatttggaatgcaagccttcagttaatgattcagtttccatcattctatgtatactctgcatcactagagtaacagaccaatattttggcatgcataac |
300 |
Q |
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| T |
9503834 |
atatttggaatgcaagccttcagttaatgattcagtttccatcattctatgtatactctgcatcactagagtaacagaccaatattttggcatgcataac |
9503735 |
T |
|
| Q |
301 |
ttcgcacaaacccaaaaacctgcccaacagaaaattgaatataattattcaaactaagttgcagatgcaagtgtgtaaatagtaaatatataaagcttgc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9503734 |
ttcgcacaaacccaaaaacctgcccaacagaaaattgaatataattattcaaactaagttgcagatgtaagtgtgtaaatagtaaatatataaagcttgc |
9503635 |
T |
|
| Q |
401 |
aagctagagactcaaatggtagactaatgtatatttgcatatctacacaagtttgtaaaaccaccaaactcagt |
474 |
Q |
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| T |
9503634 |
aagctagagactcaaatggtagactaatgtatatttgcatatctatacaagtttgtaaaaccaccaaactcagt |
9503561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 523 - 710
Target Start/End: Complemental strand, 9503548 - 9503360
Alignment:
| Q |
523 |
actactatgccatagcaaatcaccaatataagtgtacgaataatattt-tccacacacacatgactatttgacaaatgcatatattacatttttatttta |
621 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9503548 |
actactatgccatagcaaatcaccaatataagtgtacgaataatacttatccacacacacatgactatttgacaaatgcatatattacatttttatttta |
9503449 |
T |
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| Q |
622 |
atctaaattttggtttacaggattcaaccaatttaataagtgccattgatcaaatgtcttgacaagtcaatgaccggtctaggttttat |
710 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9503448 |
atataaattttggtttacaggattcaaccaatttaataagtgccattgatcaaatgtcttgacaagtcaatgaccggtctagattttat |
9503360 |
T |
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