View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_low_8 (Length: 726)

Name: NF14236_low_8
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_low_8
NF14236_low_8
[»] chr8 (8 HSPs)
chr8 (161-709)||(6171077-6171624)
chr8 (1-252)||(6126552-6126801)
chr8 (1-163)||(6171650-6171810)
chr8 (275-355)||(26052605-26052685)
chr8 (530-657)||(22224489-22224631)
chr8 (530-657)||(22230831-22230973)
chr8 (626-681)||(26845126-26845181)
chr8 (539-573)||(17689454-17689488)
[»] chr1 (2 HSPs)
chr1 (275-355)||(7363978-7364058)
chr1 (408-443)||(13837819-13837854)
[»] chr7 (3 HSPs)
chr7 (539-665)||(18251595-18251720)
chr7 (275-355)||(32028126-32028206)
chr7 (608-679)||(15815191-15815262)
[»] chr3 (3 HSPs)
chr3 (300-355)||(25638859-25638914)
chr3 (537-576)||(30738436-30738475)
chr3 (628-669)||(30738331-30738372)
[»] chr6 (1 HSPs)
chr6 (590-657)||(20461444-20461509)
[»] chr5 (1 HSPs)
chr5 (540-576)||(12165924-12165960)
[»] scaffold0044 (1 HSPs)
scaffold0044 (539-573)||(34915-34949)


Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 161 - 709
Target Start/End: Complemental strand, 6171624 - 6171077
Alignment:
Q  161 cacttgcatatgtactttgacacattggattgttctaatgacttcatattcaatatgaaacttttatgattatcatatattcttcttttgtgatgacaag 260  Q
    |||||||||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6171624 cacttgcatatgtactctgacacattggattgttcttgtgactgcatattcaatatgaaacttttatgattatcatatattcttcttttgtgatgacaag 6171525  T
Q  261 tagcagatcaaagcctcaaactcactaagggccatgtttcatatacttgtatttaacacattactacacatttgttttcagttataaataccttattata 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6171524 tagcagatcaaagcctcaaactcactaagggccatgtttcatatacttgtatttaacacattactacacatttgttttcagttataaataccttattata 6171425  T
Q  361 tttcttttgggtcttcccacaagaaggatttgtcattattaatagaggagaaggatgaactatcatatgatgatcttacaaatatgagtgaatgatagaa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6171424 tttcttttgggtcttcccacaagaaggatttgtcattattaatagaggagaaggatgaactatcatatgatgatcttacaaatatgagtgaatgatagaa 6171325  T
Q  461 agtgtaagctaaagttttgaatacattaacatatacttgtatgataaatannnnnnnnnnnnnnnnnngcaaaaagaaagtagctagcaaagtgctagac 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |                  ||||||||||||||||||||||||||||||||    
T  6171324 agtgtaagctaaagttttgaatacattaacatatacttgtatgataaa-aaaaaaattatttttttttgcaaaaagaaagtagctagcaaagtgctagac 6171226  T
Q  561 taccaaaatatattaagaaggagacaaaaaaggagggggaccaaaccaaacctccctacatattaacaaatctaaagttaggcattcctaacttgttctt 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6171225 taccaaaatatattaagaaggagacaaaaaaggagggggaccaaaccaaacctccctacatattaacaaatctgaagttaggcattcctaacttgttctt 6171126  T
Q  661 aacaacaaactccctaatacaagaaggtggagaaagccatacagttaat 709  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6171125 aacaacaaactccctaatacaagaaggtggagaaagccacacagttaat 6171077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 6126552 - 6126801
Alignment:
Q  1 tttctcagtgtgaaagagtgtggaatatgcccaatatatacctcagaattttttagtcttttagacatgttgcatttagacaaggatgtagaatcatgta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6126552 tttctcagtgtgaaagggtgtggaatatgcccaatatatacctcagaatttttgagtcttttagacatgttgcatttagacaaggatgtagaatcatgta 6126651  T
Q  101 tgcgtaggaatattcagtgtgaggaaatatgtcatgagataaaagacaatgacattgaatcacttgcatatgtactttgacacattggattgttctaatg 200  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126652 tgcgtaggaatattcagtgtt--gaaatatgtcatgagataaaagacaatgacattgaatcacttgcatatgtactttgacacattggattgttctaatg 6126749  T
Q  201 acttcatattcaatatgaaacttttatgattatcatatattcttcttttgtg 252  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6126750 acttcatattcaatatgaaacttttatgattctcatatattcttcttttgtg 6126801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 6171810 - 6171650
Alignment:
Q  1 tttctcagtgtgaaagagtgtggaatatgcccaatatatacctcagaattttttagtcttttagacatgttgcatttagacaaggatgtagaatcatgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||    
T  6171810 tttctcagtgtgaaagagtgtggaatatgcccaatatatacctcagaatttg--agtcttttaggcatgttgcatttagacaaggatgtagaatcatgta 6171713  T
Q  101 tgcgtaggaatattcagtgtgaggaaatatgtcatgagataaaagacaatgacattgaatcac 163  Q
    || ||||||||||||||||||  |||||||||||||||| |||||||||||||||| ||||||    
T  6171712 tgtgtaggaatattcagtgtgttgaaatatgtcatgagagaaaagacaatgacattaaatcac 6171650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 26052685 - 26052605
Alignment:
Q  275 ctcaaactcactaagggccatgtttcatatacttgtatttaacacattactacacatttgttttcagttataaatacctta 355  Q
    |||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||  |||||||||||||    
T  26052685 ctcaaactcactaagggccacgtttcaaatacttgtattgagcacattactacacatttgttttcacatataaatacctta 26052605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 657
Target Start/End: Original strand, 22224489 - 22224631
Alignment:
Q  530 caaaaagaaagtagctagcaaagtgctagactaccaaaatatattaagaaggagaca-------------aaaaaggagggggacca-aaccaaa-cctc 614  Q
    |||||| | |||||||||||||||||||  |||||||||||||||||||| |||| |             |||||||||| |||| | ||||||| ||||    
T  22224489 caaaaaaagagtagctagcaaagtgctaagctaccaaaatatattaagaaagagaaagcaaacgagaaacaaaaaggaggaggacaagaaccaaaacctc 22224588  T
Q  615 cctacatattaacaaatctaaagttaggcattcctaacttgtt 657  Q
    | |||||||| |||||||||||||||||||| |||||||||||    
T  22224589 cttacatattcacaaatctaaagttaggcatacctaacttgtt 22224631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 530 - 657
Target Start/End: Original strand, 22230831 - 22230973
Alignment:
Q  530 caaaaagaaagtagctagcaaagtgctagactaccaaaatatattaagaaggagaca-------------aaaaaggagggggacca-aaccaaa-cctc 614  Q
    |||||| | |||||||||||||||||||  |||||||||||||||||||| |||| |             |||||||||| |||| | ||||||| ||||    
T  22230831 caaaaaaagagtagctagcaaagtgctaagctaccaaaatatattaagaaagagaaagcaaacgagaaacaaaaaggaggaggacaagaaccaaaacctc 22230930  T
Q  615 cctacatattaacaaatctaaagttaggcattcctaacttgtt 657  Q
    | |||||||| |||||||||||||||||||| |||||||||||    
T  22230931 cttacatattcacaaatctaaagttaggcatacctaacttgtt 22230973  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 681
Target Start/End: Original strand, 26845126 - 26845181
Alignment:
Q  626 acaaatctaaagttaggcattcctaacttgttcttaacaacaaactccctaataca 681  Q
    ||||| ||| ||||||||||||| |||||||| ||| ||| |||||||||||||||    
T  26845126 acaaacctatagttaggcattcccaacttgtttttaccaaaaaactccctaataca 26845181  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 573
Target Start/End: Complemental strand, 17689488 - 17689454
Alignment:
Q  539 agtagctagcaaagtgctagactaccaaaatatat 573  Q
    |||||||||||||| ||||||||||||||||||||    
T  17689488 agtagctagcaaagcgctagactaccaaaatatat 17689454  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 7363978 - 7364058
Alignment:
Q  275 ctcaaactcactaagggccatgtttcatatacttgtatttaacacattactacacatttgttttcagttataaatacctta 355  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  7363978 ctcaaactcactaagggccacgtttcatatacttgtatttagcacattactacacatttgttttcacatataaatacctta 7364058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 443
Target Start/End: Complemental strand, 13837854 - 13837819
Alignment:
Q  408 gagaaggatgaactatcatatgatgatcttacaaat 443  Q
    ||||||||||||||||| ||||||||||||||||||    
T  13837854 gagaaggatgaactatcctatgatgatcttacaaat 13837819  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 539 - 665
Target Start/End: Original strand, 18251595 - 18251720
Alignment:
Q  539 agtagctagcaaagtgctagactaccaaaatatattaagaaggagacaaaaaaggagggggaccaaaccaaacctccctacatattaacaaatctaaagt 638  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |  |||||| ||||  || |||||||||||||| |||||||||||||||||| ||||    
T  18251595 agtagcttgcaaagtgctagactaccaaaatatattaataagaaagcaaaaa-ggagatgg-ccaaaccaaacctctctacatattaacaaatctgaagt 18251692  T
Q  639 t-aggcattcctaacttgttcttaacaa 665  Q
    | ||||||| ||||||||||||||||||    
T  18251693 taaggcattgctaacttgttcttaacaa 18251720  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 32028206 - 32028126
Alignment:
Q  275 ctcaaactcactaagggccatgtttcatatacttgtatttaacacattactacacatttgttttcagttataaatacctta 355  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||    
T  32028206 ctcaaactcactaagggccacgtttcatatacttgaatttagcacattactacacatttgttttcacatataaatacctta 32028126  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 608 - 679
Target Start/End: Original strand, 15815191 - 15815262
Alignment:
Q  608 aaacctccctacatattaacaaatctaaagttaggcattcctaacttgttcttaacaacaaactccctaata 679  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||| ||| ||| ||| ||| || ||||||    
T  15815191 aaacctccttacatattcacaaatctaaagttaggcatacctaactagtttttaccaaaaaattctctaata 15815262  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 25638914 - 25638859
Alignment:
Q  300 catatacttgtatttaacacattactacacatttgttttcagttataaatacctta 355  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  25638914 catatacttgtatttagcacattactacacatttgttttcacatataaatacctta 25638859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 576
Target Start/End: Complemental strand, 30738475 - 30738436
Alignment:
Q  537 aaagtagctagcaaagtgctagactaccaaaatatattaa 576  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  30738475 aaagtagcttgcaaagtgctagactaccaacatatattaa 30738436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 669
Target Start/End: Complemental strand, 30738372 - 30738331
Alignment:
Q  628 aaatctaaagttaggcattcctaacttgttcttaacaacaaa 669  Q
    ||||||| |||||||||| ||||||||||||| |||||||||    
T  30738372 aaatctatagttaggcatccctaacttgttctgaacaacaaa 30738331  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 590 - 657
Target Start/End: Complemental strand, 20461509 - 20461444
Alignment:
Q  590 aaggagggggaccaaaccaaacctccctacatattaacaaatctaaagttaggcattcctaacttgtt 657  Q
    |||||||||| ||||||||||||||| || | |||||||||||| ||||||||||| |||||||||||    
T  20461509 aaggaggggg-ccaaaccaaacctccttagaaattaacaaatct-aagttaggcatacctaacttgtt 20461444  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 576
Target Start/End: Complemental strand, 12165960 - 12165924
Alignment:
Q  540 gtagctagcaaagtgctagactaccaaaatatattaa 576  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12165960 gtagctagcaaagagctagactaccaaaatatattaa 12165924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 539 - 573
Target Start/End: Complemental strand, 34949 - 34915
Alignment:
Q  539 agtagctagcaaagtgctagactaccaaaatatat 573  Q
    |||||||||||||| ||||||||||||||||||||    
T  34949 agtagctagcaaagggctagactaccaaaatatat 34915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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