View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_9 (Length: 657)
Name: NF14236_low_9
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 195 - 632
Target Start/End: Original strand, 8869933 - 8870368
Alignment:
| Q |
195 |
tgtgatatttaactttgctttataggcaaaactaatatgatttgaatcaaactttcagatattttactatgacgatcgaatcatagcatgattggaataa |
294 |
Q |
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| T |
8869933 |
tgtgatttttaactttgctttataggcaaaactaatatgatttgaatcaaactttcagatattttactatgac--tcgaatcatagcatgattggaataa |
8870030 |
T |
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| Q |
295 |
accctgacaacaacacatgatgtgatttttcattgcaagatttgaatcatgcttacccttgttcaaattaacttgtccataaaactactacaacccagtt |
394 |
Q |
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| T |
8870031 |
acccttacaacaacacatgatgtgatttttcattgcaagatttgaatcatgcttacccttgttcaaattaacttgtccataaaactactagaacccagtt |
8870130 |
T |
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| Q |
395 |
tcgacacctgattcgaatcaaaatagcagtccaattactatgatttgaatcaacgcctctagaagctaaaagaacaatggattttaagcacaactgttct |
494 |
Q |
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| T |
8870131 |
tcgacacctgattcgaatcaaaatagcactccaattactatgatttgaatcaacgcctctagaagctaaaaaaacaatggattttaagcacaactgttct |
8870230 |
T |
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| Q |
495 |
ccaacatgactccaaatcaatagtgatgtcaatttaattatcaaccatattgttaatatctccatcctcaagttacttttcaaaataattgatcaagttt |
594 |
Q |
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| T |
8870231 |
cgaacatgactccaaatcaatagtgatgtcaatttaattatcaaccatattgttaatatctccatcctcaagttacttttcaaaataattgatcaagttt |
8870330 |
T |
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| Q |
595 |
aagtctctcttaaaccttgatccagtcactgacctcca |
632 |
Q |
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| T |
8870331 |
aagtctctcttaaaccttgatccagtcactgacctcca |
8870368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 8869735 - 8869881
Alignment:
| Q |
16 |
tctttttccttgatttcatcatgttcatatatatacaacaataatatcctaatgaccctcctacaatcatcaaatcattatagtaatatataatattata |
115 |
Q |
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| T |
8869735 |
tctttttccttgatttcatcatgttcatatatatacaacaataatatcctaatgaccctcctacaatcatcaaatcattatagtaatatataatattata |
8869834 |
T |
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| Q |
116 |
caattaatatagataacctcagatccctagatcccttgtcacgcaaa |
162 |
Q |
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| T |
8869835 |
caataaatatagataacctcagatccctagatcccttgtcactcaaa |
8869881 |
T |
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