View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14237_high_1 (Length: 645)
Name: NF14237_high_1
Description: NF14237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14237_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 14 - 629
Target Start/End: Complemental strand, 3243438 - 3242822
Alignment:
| Q |
14 |
aagaaccaaaatccataccacattggtataaagctgagccaaagacctcacttcagcttcagcatcactaagaaattctttcagaatctgaacatcacag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243438 |
aagaaccaaaatccataccacattggtataaagctgagccaaagacctcacttcagcttcagcatcactaagaaattctttcagaatctgaacatcacag |
3243339 |
T |
|
| Q |
114 |
tnnnnnnnnn-ttatagtaaagctaaatacttgatcataagtagcaaacaacagaagggtaataatccaaattcatcagattttagaagtttagatcagt |
212 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243338 |
taaaaaaaatattatagtaaagctaaatacttgatcataagtagcaaacaacagaagggtaataatccaaattcatcagattttagaagtttagatcagt |
3243239 |
T |
|
| Q |
213 |
tcaatctgattgaagaatttagatgacctgctataggttgtacctggcagaagacttctgacacgggtccatcattctctgatgccgacaattcttgaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243238 |
tcaatctgattgaagaatttagatgacctgctataggttgtacctggcagaagacttctgacacgggtccatcattctctgatgccgacaattcttgaat |
3243139 |
T |
|
| Q |
313 |
tactttctccagacctttactaatagcttgcatttcttctgccaaatatttcaattgtatctgtatggaaatacatcattgtaactcagcatacaccaaa |
412 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243138 |
tactttctccagtcctttactaatagcttgcatttcttctgccaaatatttcaattgtatctgtatggaaatacatcattgtaactcagcatacaccaaa |
3243039 |
T |
|
| Q |
413 |
atccaaatgagaataaacaggaaccatatgatataacagaagaataaacaaagataccttggttgcaccctccaaattgaccaggtctttggagaaatct |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3243038 |
atccaaatgagaataaacaggaaccatatgatataacagaagaataaacaaagataccttggttgcaccctccaaattgaccaggtctttggagaaatct |
3242939 |
T |
|
| Q |
513 |
aaaagttccggaagcttttcagcaagcacctaccaaccatagaaacgaataattaatacaacattacgaaataaagatgttattaagaaaccgaaataat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3242938 |
aaaagttccggaagcttttcagcaagcacctaccaaccatagaaacgaataattaatacaacattacgaaataaagatgttattaagaaaccgaaataat |
3242839 |
T |
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| Q |
613 |
tttacttgtgagaagaa |
629 |
Q |
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|||||||||||| |||| |
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| T |
3242838 |
tttacttgtgaggagaa |
3242822 |
T |
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