View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14237_low_3 (Length: 528)
Name: NF14237_low_3
Description: NF14237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14237_low_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Complemental strand, 43030307 - 43029801
Alignment:
| Q |
16 |
attaaacttggcatgtctaaagtaactataggaaaagaaccagaaagttggttgttgctaaggtctagttcttgaagaaatgtgaagtctttgaatgttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43030307 |
attaaacttggcatgtctaaagtaactataggaaaagaaccagaaagttggttgttgctaaggtctagttcttgaagaaatatgaagtctttgaatgttt |
43030208 |
T |
|
| Q |
116 |
caggaactgtacctgaaaatttattagtgttgaggtggagaagtgttatagcagatagtaaagagagttctttaacaagtgttccttggagatttgcatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030207 |
caggaactgtacctgaaaatttattagtgttgaggtggagaagtgttatagcagatagtaaagagagttctttaacaagtgttccttggagatttgcatg |
43030108 |
T |
|
| Q |
216 |
gttgagatctattcctgcaacaaaaggagtattactagtagtgtcacaaaagattcctttataagaacaaacattaggaccaacccatgtatctaaaatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030107 |
gttgagatctattcctgcaacaaaaggagtattactagtagtgtcacaaaagattcctttataagaacaaacattaggaccaacccatgtatctaaaatc |
43030008 |
T |
|
| Q |
316 |
tttaaagggtcatcagtgattgaagatttccaagcttgaagagctttgtaggcattgtttagatttgacacagatgatcctgaagatcctgggatgttag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030007 |
tttaaagggtcatcagtgattgaagatttccaagcttgaagagctttgtaggcattgtttagatttgacacagatgatcctgaagatcctgggatgttag |
43029908 |
T |
|
| Q |
416 |
gaccatcattgccattgccaatgccaattccaatgccaacaccaacaccaatgcctataccaatggcagcttttgctgcatctgggagaaggagaagaag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
43029907 |
gaccatcattgccattgccaatgccaatgccaatgccaaca------ccaatggctataccaatggcagcttttgctggatttgggagaaggagaagaag |
43029814 |
T |
|
| Q |
516 |
gaggtggagaaaa |
528 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43029813 |
gaggtggagaaaa |
43029801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 34201693 - 34201790
Alignment:
| Q |
260 |
cacaaaagattcctttataagaacaaacattaggaccaacccatgtatctaaaatctttaaagggtcatcagtgattgaagatttccaagcttgaaga |
357 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||| | |||| ||| | ||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
34201693 |
cacagaagattcctttatatgaacatacatttgaaccattccaagaatctagtatctttaaagggtcatcagtgattgcagatttccatgcttgaaga |
34201790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 34201427 - 34201531
Alignment:
| Q |
21 |
acttggcatgtctaaagtaactataggaaaagaaccagaaagttggttgttgctaaggtctagttcttgaagaaatgtgaagtctttgaatgtttcagga |
120 |
Q |
| |
|
||||||||| | ||||||||| | |||||||||||| ||||||||||| || || ||||||| |||||||| | | |||||||||||||||||| |
|
|
| T |
34201427 |
acttggcatatataaagtaaccaaaggaaaagaacctgaaagttggttattacttaggtctaactcttgaagtgaaacaagatctttgaatgtttcagga |
34201526 |
T |
|
| Q |
121 |
actgt |
125 |
Q |
| |
|
||||| |
|
|
| T |
34201527 |
actgt |
34201531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University