View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14237_low_4 (Length: 502)

Name: NF14237_low_4
Description: NF14237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14237_low_4
NF14237_low_4
[»] chr1 (2 HSPs)
chr1 (19-487)||(3242127-3242600)
chr1 (33-155)||(14303893-14304015)
[»] chr8 (2 HSPs)
chr8 (21-160)||(30011730-30011869)
chr8 (21-162)||(26819223-26819362)
[»] chr4 (2 HSPs)
chr4 (221-301)||(54643688-54643768)
chr4 (109-157)||(7601447-7601495)
[»] chr7 (3 HSPs)
chr7 (32-103)||(36853097-36853168)
chr7 (100-164)||(24547796-24547860)
chr7 (25-88)||(46766088-46766151)
[»] chr3 (1 HSPs)
chr3 (109-164)||(47702676-47702731)
[»] chr6 (1 HSPs)
chr6 (109-162)||(4593797-4593850)
[»] chr5 (2 HSPs)
chr5 (32-101)||(35035571-35035640)
chr5 (31-91)||(16230759-16230819)
[»] chr2 (3 HSPs)
chr2 (32-141)||(29427781-29427890)
chr2 (100-164)||(17213789-17213853)
chr2 (31-93)||(26804050-26804112)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Original strand, 3242127 - 3242600
Alignment:
Q  19 taacactgttagcaaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctgacagttctgattgatta 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3242127 taacactgttagcaaatcataaccaatcttatgtctgactttagaaggagtgataattaaagtctaacgtttttattgatctgacagttctgattgatta 3242226  T
Q  119 acagtttaaaaaatctttacactaactatgtatatgaattaaatccctattctattttccaagtcaacatccttttctcttcagctttcattgttacgtg 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  3242227 acagtttaaaaaatctttacactaactatgtatat-aattaaatccctattctattttccaagtcaacatccttttctcttcagctttcattgatatgtg 3242325  T
Q  219 tatcagataaggaattcggtcaaattgaaaagaatcatgcagaccattctttctcttggcaatgctttgaatcatggaactgcaagaggtaaattgaagc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242326 tatcagataaggaattcggtcaaattgaaaagaatcatgcagaccattctttctcttggcaatgctttgaatcatggaactgcaagaggtaaattgaagc 3242425  T
Q  319 tttagcatttgctatttcactgtcatgaagcatatgttgatagattcaggccctaga------nnnnnnnnnnggaaatctaacatgaacgtttcggcta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||    
T  3242426 tttagcatttgctatttcactgtcatgaagcatatgttgatagattcaggccctagattttttttttttttttggaaatctaacatgaacgtttcggcta 3242525  T
Q  413 gtctaagtcatataatttatgtgcatcttgtagttagtattcgacatttacttttggtctttagatgactaatat 487  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3242526 gtctaagtcatataatttatgtgcatcttgtagttagtgttcgacatttacttttggtctttagatgactaatat 3242600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 14304015 - 14303893
Alignment:
Q  33 aatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctgacagttctgattgattaacagtttaaaaaat 132  Q
    |||||||||||||| ||||  |||||||| ||| ||| || ||||||||| ||| ||| ||  ||||||||  | |||||||||| ||||| ||||||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaacttttataacgatctgacgatgctgattgattgacagtgtaaaaaat 14303916  T
Q  133 ctttacactaactatgtatatga 155  Q
    ||||||| | || ||||||||||    
T  14303915 ctttacattgacaatgtatatga 14303893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 30011730 - 30011869
Alignment:
Q  21 acactgttagcaaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctgacagttctgattgattaac 120  Q
    ||||||| | ||||||| || ||||| ||||| ||| |||||||| ||| || ||| ||||| |||||||||| || | |||||  | ||||||||| ||    
T  30011730 acactgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgattgac 30011829  T
Q  121 agtttaaaaaatctttacactaactatgtatatgaattaa 160  Q
    ||| |||||||| |||| ||| ||  ||||||||||||||    
T  30011830 agtgtaaaaaatgtttaaactgacagtgtatatgaattaa 30011869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 26819362 - 26819223
Alignment:
Q  21 acactgttagcaaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctgacagttctgattgattaac 120  Q
    ||||| ||||||||||||||||||||  |||| |||||||||||| |||    || |||||| |||||||||| |||||| ||  || | ||||||| |     
T  26819362 acactattagcaaatcacaaccaatc--atgtgtgactttagaagtagttgcgataaaagtcaaacatttttaatgatctaacgattgtaattgattgaa 26819265  T
Q  121 agtttaaaaaatctttacactaactatgtatatgaattaaat 162  Q
     || |||| |||||||||||| ||  ||||||| ||||||||    
T  26819264 tgtgtaaataatctttacactgacggtgtatattaattaaat 26819223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 54643688 - 54643768
Alignment:
Q  221 tcagataaggaattcggtcaaattgaaaagaatcatgcagaccattctttctcttggcaatgctttgaatcatggaactgc 301  Q
    |||||| |||||||| ||||||||||| ||||| ||||| || || ||| |||| || |||||||||||||| ||||||||    
T  54643688 tcagatcaggaattctgtcaaattgaagagaattatgcaaacaatacttactctaggaaatgctttgaatcaaggaactgc 54643768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 7601447 - 7601495
Alignment:
Q  109 tgattgattaacagtttaaaaaatctttacactaactatgtatatgaat 157  Q
    ||||||||| ||||| ||||||||||||||||| |  ||||||||||||    
T  7601447 tgattgattgacagtgtaaaaaatctttacactgataatgtatatgaat 7601495  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 36853097 - 36853168
Alignment:
Q  32 aaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctgac 103  Q
    ||||||||||||||| ||||| |||||||||||| ||| || |||| | || || |||||||||||||||||    
T  36853097 aaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatcaaatatttttattgatctgac 36853168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 24547796 - 24547860
Alignment:
Q  100 tgacagttctgattgattaacagtttaaaaaatctttacactaactatgtatatgaattaaatcc 164  Q
    ||||| || ||||| ||| ||||| ||| ||||||||||| |||| |||||||||||||||||||    
T  24547796 tgacaattatgatttattgacagtgtaacaaatctttacaataacgatgtatatgaattaaatcc 24547860  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 46766151 - 46766088
Alignment:
Q  25 tgttagcaaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacat 88  Q
    ||||||||||||| |||||||| ||||| |||||||||||| ||  || ||||||||| |||||    
T  46766151 tgttagcaaatcataaccaatcatatgtgtgactttagaagcaggtatgattaaagtcaaacat 46766088  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 47702731 - 47702676
Alignment:
Q  109 tgattgattaacagtttaaaaaatctttacactaactatgtatatgaattaaatcc 164  Q
    ||||||||| ||||| |||||||||||||||||||| || |||||||||| |||||    
T  47702731 tgattgattgacagtgtaaaaaatctttacactaacaatatatatgaattgaatcc 47702676  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 4593850 - 4593797
Alignment:
Q  109 tgattgattaacagtttaaaaaatctttacactaactatgtatatgaattaaat 162  Q
    ||||| ||| ||||| ||||||||||||||| ||||||| ||||||||||||||    
T  4593850 tgatttattgacagtgtaaaaaatctttacattaactatatatatgaattaaat 4593797  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 35035640 - 35035571
Alignment:
Q  32 aaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctg 101  Q
    ||||||||||||||| ||||| ||| |||||||| ||| || |||||| || || |||||||||||||||    
T  35035640 aaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaaatcaaatatttttattgatctg 35035571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 16230759 - 16230819
Alignment:
Q  31 caaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttt 91  Q
    |||||||||||||||| ||||| ||| |||||||| ||| || ||||||||| ||||||||    
T  16230759 caaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacatttt 16230819  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 29427781 - 29427890
Alignment:
Q  32 aaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacatttttattgatctgacagttctgattgattaacagtttaaaaaa 131  Q
    ||||||||||||| | ||||| |||||||| ||| | | | ||||||||   ||| || ||| |||| ||||| || ||||||| | |||||||||||||    
T  29427781 aaatcacaaccaaccatatgtgtgactttaaaagtaattacaattaaagggaaacgttcttaatgatttgacaattatgattgaatgacagtttaaaaaa 29427880  T
Q  132 tctttacact 141  Q
    ||||||||||    
T  29427881 tctttacact 29427890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 17213789 - 17213853
Alignment:
Q  100 tgacagttctgattgattaacagtttaaaaaatctttacactaactatgtatatgaattaaatcc 164  Q
    ||||| || ||||||||| ||||| ||||  ||||||||||| || |||||||||||||||||||    
T  17213789 tgacaattatgattgattgacagtataaactatctttacactgacaatgtatatgaattaaatcc 17213853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 26804050 - 26804112
Alignment:
Q  31 caaatcacaaccaatcttatgtctgactttagaaggagtgataattaaagtcgaacattttta 93  Q
    |||||||||| ||||||||| |||||||||||||| | | ||||||| ||||  |||||||||    
T  26804050 caaatcacaatcaatcttatctctgactttagaagtaattataattagagtcatacattttta 26804112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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