View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14237_low_5 (Length: 352)
Name: NF14237_low_5
Description: NF14237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14237_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 21055881 - 21056189
Alignment:
| Q |
30 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055881 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
21055980 |
T |
|
| Q |
130 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctatttt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21055981 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtgctccagtgatgcattgtatacctctatttt |
21056080 |
T |
|
| Q |
230 |
tggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaa |
329 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21056081 |
tggagttgcggataagtttacttactggaagttgcattggagtgtttgagtttaacttgacaatggcatgcttattgtaaagtagattagatatagaaaa |
21056180 |
T |
|
| Q |
330 |
agttgatgt |
338 |
Q |
| |
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||||||||| |
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| T |
21056181 |
agttgatgt |
21056189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 336
Target Start/End: Complemental strand, 26366064 - 26365764
Alignment:
| Q |
29 |
tatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaa |
128 |
Q |
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||||||||||| | ||||||||||||| | ||| ||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||| |||| |||| |
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| T |
26366064 |
tatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccatttctggtttatctatttgaa |
26365965 |
T |
|
| Q |
129 |
tgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattt |
228 |
Q |
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|||| |||||| ||||||| |||||||||| |||||||||| ||| ||||| | |||| |||||||| | | ||||||||||||||||||||| ||| |
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| T |
26365964 |
tgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtgatgcattgtatacctct-ttt |
26365868 |
T |
|
| Q |
229 |
ttggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaa |
328 |
Q |
| |
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|||| |||| || ||||||||||| || |||| ||| ||||||||| |||||| |||| |||||||||| ||||| ||| | |||| ||||||||| |
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| T |
26365867 |
ttgg-gttgttgacaagtttacttattggaagctgca---gagtgtttgggtttaatttgaaaatggcatgcctataggaaatttgattgaatatagaaa |
26365772 |
T |
|
| Q |
329 |
aagttgat |
336 |
Q |
| |
|
|||||||| |
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|
| T |
26365771 |
aagttgat |
26365764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 338
Target Start/End: Complemental strand, 26363573 - 26363270
Alignment:
| Q |
32 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
130 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||| ||||||| |||| |||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||| |
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|
| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
|
| Q |
131 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattttt |
230 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| ||| | ||||| ||||||||||||||| | | |||| |||||| ||| |||| ||| | |
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| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatgcagtagtgtgaagcattgcatatctct-tttgt |
26363375 |
T |
|
| Q |
231 |
ggagttgcggataagtttactta-ctgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagattagatatagaaaa |
329 |
Q |
| |
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|| |||| || ||||||||||| | |||| ||| |||||| || ||||||||||| |||||||||||||||| ||| | |||| |||| ||||| |
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| T |
26363374 |
gg-gttgttgacaagtttacttatgggaaagctgca---gagtgtctgtgtttaacttgagaatggcatgcttataggaaatttgatttaatattgaaaa |
26363279 |
T |
|
| Q |
330 |
agttgatgt |
338 |
Q |
| |
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||||||||| |
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|
| T |
26363278 |
agttgatgt |
26363270 |
T |
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