View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14238_high_1 (Length: 588)
Name: NF14238_high_1
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 14239089 - 14239657
Alignment:
| Q |
1 |
caagagacaagcaactgaagatgcaaaaatcatatctatgaaattcaaatgagcgagaaacggaaaaaatgccagtatgacatactctattgaggattcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239089 |
caagagacaagcaactgaagatgcaaaaatcatatctatgaaattcaaatgagcgagaaacggaaaaaatgccagtatgacatactctattgaggattcg |
14239188 |
T |
|
| Q |
101 |
tccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataaccagctgtaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239189 |
tccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataaccagctgtaaca |
14239288 |
T |
|
| Q |
201 |
agtaacaaccctttaacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataagagttgttccttcaatcggtggcttgacatcgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239289 |
agtaacaaccctttaacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataagagttgttccttcaatcggtggcttgacatcgg |
14239388 |
T |
|
| Q |
301 |
ctgagatgggagttgccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatgagccaataatatgaatggtacaagagctccccc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14239389 |
ctgagatgggagttgccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatgagccaataatatgaatggtacaagaactccccc |
14239488 |
T |
|
| Q |
401 |
gtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttggccttgtggttcgcctttatca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14239489 |
atatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttggccttgtggttcgcctttatca |
14239588 |
T |
|
| Q |
501 |
cctgatttaccattttgctcatctttgtttgcctcttcgtgtgtgctagagatattttcttcttgttct |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
14239589 |
cctgatttaccattttgctcatctttgtttgcctcttcatgtgtgccagagatattttcttcttgttct |
14239657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 12 - 537
Target Start/End: Original strand, 41450175 - 41450700
Alignment:
| Q |
12 |
caactgaagatgcaaaaatcatatctatgaaattcaaatgagcgagaaacggaaaaaatgccagtatgacatactctattgaggattcgtccacttggag |
111 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| |||||| || ||||| |||||||||| ||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
41450175 |
caactgaagatgtaaaaatcatatatctgaaaagcaaatgggcaagaaatggaaaaaatgttagtgtgacatactctattaaggattcgaccacttggag |
41450274 |
T |
|
| Q |
112 |
tagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataaccagctgtaacaagtaacaaccc |
211 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
41450275 |
tagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataaccaactgtaacaagtaacaatgc |
41450374 |
T |
|
| Q |
212 |
tttaacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataagagttgttccttcaatcggtggcttgacatcggctgagatggga |
311 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
41450375 |
tctaacaagaatgcataaagaacttccaatggcaaaaccaacatagacttcaataagagttgttccttcaacaggtggctcgacttcggctgagatggga |
41450474 |
T |
|
| Q |
312 |
gttgccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatgagccaataatatgaatggtacaagagctcccccgtatgcagttg |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||| ||| || |||||||||| |
|
|
| T |
41450475 |
gttgcccaagccatccaatagttgcttccaatttgaagagcttgaaaaagaatctgagcgaataatatgaacggtacaagagatcctccatatgcagttg |
41450574 |
T |
|
| Q |
412 |
tgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttggccttgtggttcgcctttatcacctgatttacc |
511 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
41450575 |
tgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagttggccttgcggttcgcctttatcatctgctttacc |
41450674 |
T |
|
| Q |
512 |
attttgctcatctttgtttgcctctt |
537 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41450675 |
attttgctcatctttgtttgcctctt |
41450700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Original strand, 41436953 - 41437474
Alignment:
| Q |
16 |
tgaagatgcaaaaatcatatctatgaaattcaaatgagcgagaaacggaaaaaa-tgccagtatgacatactctattgaggattcgtccacttggagtag |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| || || ||||| |||||||| || ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
41436953 |
tgaagatgcaaaaatcatatctctgaaaagcaa-tgggcaagaaatggaaaaaaatgttggtatgacatactctattaaggattcgaccacttggagtag |
41437051 |
T |
|
| Q |
115 |
aatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataaccagctgtaacaagtaacaacccttt |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || | |
|
|
| T |
41437052 |
aatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagctgtcttataaccaactgtacaaagtaacaatgctct |
41437151 |
T |
|
| Q |
215 |
aacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataagagttgttccttcaatcggtggcttgacatcggctgagatgggagtt |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
41437152 |
aacaagaatgcataaagaacttccaatggcaaaaccaccatagacttcaataagagttgttccttcaacaggtggctcgacttcggctgagatgggagtt |
41437251 |
T |
|
| Q |
315 |
gccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatgagccaataatatgaatggtacaagagctcccccgtatgcagttgtga |
414 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||| ||| || ||||||||||||| |
|
|
| T |
41437252 |
gcccaagccatccaatagttgcttccaatttgaagagcttgaaaaagaatctgagagaataatatgaacggtacaagagatcctccatatgcagttgtga |
41437351 |
T |
|
| Q |
415 |
tatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttggccttgtggttcgcctttatcacctgatttaccatt |
514 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
41437352 |
tatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagttggccttgcggttcgcctttatcatctgctttaccatt |
41437451 |
T |
|
| Q |
515 |
ttgctcatctttgtttgcctctt |
537 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41437452 |
ttgctcatctttgtttgcctctt |
41437474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 168 - 568
Target Start/End: Complemental strand, 14374093 - 14373693
Alignment:
| Q |
168 |
agtatagtagctgtcttataaccagctgtaacaagtaacaaccctttaacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataa |
267 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
14374093 |
agtatagtagctgtcttacaaccaactgtaacaagtaacatagatctaacaagaatgcatatagaacttgcaaaggccaaaccaacatagacttcaataa |
14373994 |
T |
|
| Q |
268 |
gagttgttccttcaatcggtggcttgacatcggctgagatgggagttgccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatg |
367 |
Q |
| |
|
|||| || ||||||| ||||||| ||||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14373993 |
gagtcgtcccttcaacaggtggctccacatctgctgagatgggagttgcccacgccatccagtagttgcttccaatttgaagagcttgaaaaagaatata |
14373894 |
T |
|
| Q |
368 |
agccaataatatgaatggtacaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttct |
467 |
Q |
| |
|
|||||||||||||||||||| | || ||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
14373893 |
ggccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaatacaccgaaaacccaactttacctttctccctttcttcttct |
14373794 |
T |
|
| Q |
468 |
tgaacgagttggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctcttcgtgtgtgctagagatattttcttcttgtt |
567 |
Q |
| |
|
||||| |||||| || ||||||| |||||| ||| ||||||||||||| |||||||| |||||||||| || |||| ||||||| || ||||||||| |
|
|
| T |
14373793 |
tgaacaagttggtttttcggttcgctattatcatctgctttaccattttgcacatctttggttgcctcttcatgagtgccagagatacttacttcttgtt |
14373694 |
T |
|
| Q |
568 |
c |
568 |
Q |
| |
|
| |
|
|
| T |
14373693 |
c |
14373693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 14375015 - 14374918
Alignment:
| Q |
76 |
tatgacatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtata |
173 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| || || || |||||||||||||| |||||||||||| |
|
|
| T |
14375015 |
tatgacatactctattaaggatccgtccacttggagtagaatcgaaaaatgacatgggggcgcgaaagatacacaagtgcatttttttgaagagtata |
14374918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 80 - 483
Target Start/End: Original strand, 22749172 - 22749575
Alignment:
| Q |
80 |
acatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagct |
179 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||| | ||||||||| ||||| || || || |||||||| | |||||||| |||||||||| ||||||| |
|
|
| T |
22749172 |
acataccctattaaggattcttccacttggagtggcatcaaaaaaagacattggagcgcgaaaaatgcagagatgcattttgttgaagagtagagtagct |
22749271 |
T |
|
| Q |
180 |
gtcttataaccagctgtaacaagtaacaaccctttaacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataagagttgttcctt |
279 |
Q |
| |
|
|| ||||||||||| || |||| | || || || | |||| ||||||||| |||||||||| |||||||| | || || |||||| |
|
|
| T |
22749272 |
gttttataaccagcggtgacaacaagtgttgctctagataggacacataaagaacttcctatggccaaacatacatagacaactaggagtgtagttcctc |
22749371 |
T |
|
| Q |
280 |
caatcggtggcttgacatcggctgagatgggagttgccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatgagccaataatat |
379 |
Q |
| |
|
||| ||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| | || | ||| | |||| |
|
|
| T |
22749372 |
caacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgaagaagttgaaacatgatttcagctatcaatac |
22749471 |
T |
|
| Q |
380 |
gaatggtacaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttgg |
479 |
Q |
| |
|
|| || |||||||| || || ||||| || || ||||| ||||| ||||| ||||| ||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
22749472 |
gagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttgt |
22749571 |
T |
|
| Q |
480 |
cctt |
483 |
Q |
| |
|
|||| |
|
|
| T |
22749572 |
cctt |
22749575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 22741966 - 22741911
Alignment:
| Q |
78 |
tgacatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcgg |
133 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || | ||||||||| |||||||| |
|
|
| T |
22741966 |
tgacatactctattaagaattcgtccacttggtgtcgcatcaaaaaacgacatcgg |
22741911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 32119393 - 32119505
Alignment:
| Q |
76 |
tatgacatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagt |
175 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||||||| |||||| | | ||||| || || ||| | ||||||||||| ||||||||||||| |
|
|
| T |
32119393 |
tatgacatactctattaaagatctgtccacttggagtagaattgaaaaattatacgggggcgcgaaagatgtaaaagtgcattttcttgaagagtatagg |
32119492 |
T |
|
| Q |
176 |
agctgtcttataa |
188 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32119493 |
agctgtcttataa |
32119505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 2309974 - 2309933
Alignment:
| Q |
95 |
gattcgtccacttggagtagaatcaaaaaatgacatcggggc |
136 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||| |
|
|
| T |
2309974 |
gattcttccagttggggtagaatcaaaaaatgacatcggggc |
2309933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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