View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14238_high_11 (Length: 264)

Name: NF14238_high_11
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14238_high_11
NF14238_high_11
[»] chr3 (8 HSPs)
chr3 (5-162)||(1186701-1186859)
chr3 (5-162)||(1204765-1204923)
chr3 (5-162)||(1304167-1304325)
chr3 (112-254)||(1187099-1187241)
chr3 (33-145)||(476522-476632)
chr3 (48-145)||(8032804-8032901)
chr3 (32-145)||(481454-481565)
chr3 (16-145)||(5360527-5360654)
[»] scaffold0438 (1 HSPs)
scaffold0438 (42-145)||(5808-5911)
[»] chr8 (3 HSPs)
chr8 (42-145)||(26291427-26291530)
chr8 (42-145)||(26304684-26304787)
chr8 (42-145)||(26338039-26338142)
[»] chr2 (3 HSPs)
chr2 (17-145)||(43867041-43867167)
chr2 (42-145)||(43874725-43874825)
chr2 (42-79)||(38989604-38989641)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 1186701 - 1186859
Alignment:
Q  5 ttgtaacgatgatgatgatggttctgttgtcgaccccttt-ccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcg 103  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  1186701 ttgtaacgatgatgatgatggttctgtcgtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtacttaggggtaatgca 1186800  T
Q  104 caaaaccttcgcatttcatgtaccaagcttgtcaatttaactttgcatatgtattgttg 162  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | ||||||| ||||    
T  1186801 caaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttg 1186859  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 1204765 - 1204923
Alignment:
Q  5 ttgtaacgatgatgatgatggttctgttgtcgaccccttt-ccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcg 103  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  1204765 ttgtaacgatgatgatgatggttctgtcgtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtacttaggggtaatgca 1204864  T
Q  104 caaaaccttcgcatttcatgtaccaagcttgtcaatttaactttgcatatgtattgttg 162  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | ||||||| ||||    
T  1204865 caaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttg 1204923  T

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Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 1304325 - 1304167
Alignment:
Q  5 ttgtaacgatgatgatgatggttctgttgtcgaccccttt-ccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcg 103  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  1304325 ttgtaacgatgatgatgatggttctgtcgtcgaccccttttccacatttaacatgttgaatactttgatcattgaccgctgtgtacttaggggtaatgca 1304226  T
Q  104 caaaaccttcgcatttcatgtaccaagcttgtcaatttaactttgcatatgtattgttg 162  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | ||||||| ||||    
T  1304225 caaaaccttcgcatttcatgtaccaagcttctcaatttaactatacgtatgtatggttg 1304167  T

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Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 1187099 - 1187241
Alignment:
Q  112 tcgcatttcatgtaccaagcttgtcaatttaactttgcatatgtattgttgtttctatggtttgtttcctaccaccacagccaaagccaaattcaaaatc 211  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  1187099 tcgcatttcatgtaccaagcttctcaatttaactctacatatgtattgttgtttctatggtttgtttccaaccaccacaaccaaagccaatttcaaaatc 1187198  T
Q  212 gatttcggaatccacttgtgtgctccaacacttcattcctttg 254  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  1187199 gatttcggaatccacttgtgtgctccaacaattcattcctttg 1187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 476522 - 476632
Alignment:
Q  33 gtcgaccccttt-ccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagc 131  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||   |||||| ||  ||   |||| |||||||||||||||||| |||||||||    
T  476522 gtcgaccccttttccacatttaacatgttgaatactttgatcattgacttatgtgtaattctgg---atgcacaaaaccttcgcatttcaagtaccaagc 476618  T
Q  132 ttgtcaatttaact 145  Q
    || |||||||||||    
T  476619 ttctcaatttaact 476632  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 8032901 - 8032804
Alignment:
Q  48 catttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttgtcaatttaact 145  Q
    ||||||||||||||| |||||||||||||||| | |||||||||   |  ||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  8032901 catttaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaaataccaagcttgtcaatttaact 8032804  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 481454 - 481565
Alignment:
Q  32 tgtcgaccccttt-ccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaag 130  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||||  ||||||||||  ||   |||| | ||||||| |||||||| ||||||||    
T  481454 tgtcgaccccttttccgcatttaacatgttggatactttgatcattgactgctgtgtacttctgg---atgcacgaaacctttgcatttcaagtaccaag 481550  T
Q  131 cttgtcaatttaact 145  Q
    ||| ||| |||||||    
T  481551 cttctcagtttaact 481565  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 5360654 - 5360527
Alignment:
Q  16 atgatgatggttctgttgtcgaccccttt-ccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcg 114  Q
    ||||||||||||   |||||||||||||| ||  |||||||||||||  |||||||| |||||||| ||||||||||   | |||||| ||||||| |||    
T  5360654 atgatgatggtt---ttgtcgaccccttttccgaatttaacatgttgtctactttgagcattgaccgctgtgtacttcttgctaatgcacaaaaccatcg 5360558  T
Q  115 catttcatgtaccaagcttgtcaatttaact 145  Q
     |||||| ||||||||| ||| |||||||||    
T  5360557 tatttcaagtaccaagcctgttaatttaact 5360527  T

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Target: scaffold0438 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 5808 - 5911
Alignment:
Q  42 tttccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttgtcaattt 141  Q
    |||||||||| |||||||||| |||||||||||||||| | |||||||||   |  ||||| |||||||||||||||||| |||||||||||||||||||    
T  5808 tttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaattt 5907  T
Q  142 aact 145  Q
    ||||    
T  5908 aact 5911  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 26291427 - 26291530
Alignment:
Q  42 tttccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttgtcaattt 141  Q
    |||||||||| |||||||||| |||||||||||||||| | |||||||||   |  ||||| |||||||||||||||||| |||||||||||||||||||    
T  26291427 tttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaattt 26291526  T
Q  142 aact 145  Q
    ||||    
T  26291527 aact 26291530  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 26304684 - 26304787
Alignment:
Q  42 tttccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttgtcaattt 141  Q
    |||||||||| |||||||||| |||||||||||||||| | |||||||||   |  ||||| |||||||||||||||||| |||||||||||||||||||    
T  26304684 tttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaattt 26304783  T
Q  142 aact 145  Q
    ||||    
T  26304784 aact 26304787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 26338039 - 26338142
Alignment:
Q  42 tttccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttgtcaattt 141  Q
    |||||||||| |||||||||| |||||||||||||||| | |||||||||   |  ||||| |||||||||||||||||| |||||||||||||||||||    
T  26338039 tttccacattcaacatgttgactactttgatcattgacaaatgtgtacttgttgacaatgcacaaaaccttcgcatttcaagtaccaagcttgtcaattt 26338138  T
Q  142 aact 145  Q
    ||||    
T  26338139 aact 26338142  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 43867167 - 43867041
Alignment:
Q  17 tgatgatggttctgttgtcgacccctttcc-acatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgc 115  Q
    ||||| ||||| ||| ||||| |||||| | ||||||||||||||||||  |||||||||||||   ||| || ||  ||   |||| ||||||||| ||    
T  43867167 tgatgctggttgtgtcgtcgagcccttttcgacatttaacatgttgaatcgtttgatcattgacagttgtatagttcagg---atgcacaaaacctttgc 43867071  T
Q  116 atttcatgtaccaagcttgtcaatttaact 145  Q
    || ||| |||||||||||||||||||||||    
T  43867070 atatcaagtaccaagcttgtcaatttaact 43867041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 43874825 - 43874725
Alignment:
Q  42 tttccacatttaacatgttgaatactttgatcattgaccactgtgtacttaggggtaatgcgcaaaaccttcgcatttcatgtaccaagcttgtcaattt 141  Q
    |||| ||||||||||||||||||  |||||||||||||   ||| || ||  ||   |||| ||||||||| |||| ||| |||||||||||||||||||    
T  43874825 tttcaacatttaacatgttgaatcgtttgatcattgacagttgtttagttcagg---atgcacaaaacctttgcatatcaagtaccaagcttgtcaattt 43874729  T
Q  142 aact 145  Q
    ||||    
T  43874728 aact 43874725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 38989604 - 38989641
Alignment:
Q  42 tttccacatttaacatgttgaatactttgatcattgac 79  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  38989604 tttccacatttaaaatgttgaatagtttgatcattgac 38989641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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