View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14238_high_12 (Length: 264)

Name: NF14238_high_12
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14238_high_12
NF14238_high_12
[»] chr1 (2 HSPs)
chr1 (1-264)||(47125010-47125280)
chr1 (76-264)||(7298151-7298348)
[»] chr4 (4 HSPs)
chr4 (1-264)||(35346690-35346959)
chr4 (1-264)||(11882414-11882683)
chr4 (1-264)||(33433123-33433398)
chr4 (1-264)||(33018065-33018323)
[»] chr3 (3 HSPs)
chr3 (1-264)||(12009317-12009579)
chr3 (1-264)||(51986199-51986462)
chr3 (1-264)||(47668658-47668927)
[»] chr8 (1 HSPs)
chr8 (1-264)||(34053512-34053779)
[»] chr6 (1 HSPs)
chr6 (1-264)||(6534687-6534963)
[»] chr7 (2 HSPs)
chr7 (1-177)||(26761884-26762060)
chr7 (187-264)||(26761783-26761860)
[»] chr5 (2 HSPs)
chr5 (5-176)||(43068445-43068621)
chr5 (187-264)||(43068645-43068722)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47125280 - 47125010
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
47125280 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaagccaaatcggta 47125181  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag-------nnnnnnnnnatctttg 193  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                |||||||    
47125180 ttattgaaagatgaatttgaattccaatttgattagcattttaaaaggaattgtcaaaaaattgattaaatctgcagttttttttttttttttatctttg 47125081  T
194 atgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
47125080 atgaatatgaaagttttaacattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 47125010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 7298151 - 7298348
Alignment:
76 aaaacaaaacaaagccaaatcggtattattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |    
7298151 aaaacaaaacaaagccaaatcggtattattgaaagatgaatttgaattccaatttgattagca-tttaaaaggaattgtcaaaaaattgattagatcttc 7298249  T
176 ag----------nnnnnnnnnatctttgatgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||                   |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
7298250 agtttttattttttattttttatctttgatgaatatgaaagttttaatattttatttattgggcttgtttgaaatgttaagagtagaacaatgaaggaa 7298348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 35346690 - 35346959
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
35346690 tatttaatttcactttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaagccaaatcggta 35346789  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgca------gnnnnnnnnnatctttga 194  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||                ||||||||    
35346790 ttattgaaagatgaatttgaattccaatttgattagcattttaaaaggaattgtcgaaaaattgattaaatctgcaattttttattatttttatctttga 35346889  T
195 tgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35346890 tgaatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 35346959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 11882414 - 11882683
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
11882414 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccc-aaagggaattattgaacgatcaaaacaaaacaaagtcaaatcggta 11882512  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag-------nnnnnnnnnatctttg 193  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                |||||||    
11882513 ttattgaaagatgaatttgaattccaatttgattagcattttaaaaggaattgtcaaaaaattgattaaatctgcagttttttttttatttttatctttg 11882612  T
194 atgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
11882613 atgaatatgaaagttttaacattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 11882683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 33433398 - 33433123
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
33433398 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaagccaaatcggta 33433299  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag------------nnnnnnnnnat 188  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||                     ||    
33433298 ttattgaaagatgaatttgaattccaatttgattagcattttaaaagaaattgtcaaaaaattgattaaatctgcagttttttattttttttatttttat 33433199  T
189 ctttgatgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
33433198 ctttgatgaatatgaaagttttaacattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 33433123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 33018065 - 33018323
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
33018065 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattctagaacgatcaaaacaaaacaaagccaaatcggta 33018164  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag-------nnnnnnnnnatctttg 193  Q
    |||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||                |||||||    
33018165 ttattgaaagatgaatttgaa------------tagcattttaaaaggaattgtcaaaaaattgattaaatctgcagtttttatttttttattatctttg 33018252  T
194 atgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
33018253 atgaatatgaaagttttaacattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 33018323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 12009579 - 12009317
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
12009579 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaggggaattattgaacaatcaaaacaaaacaaagccaaatcggta 12009480  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcagnnnnnnnnnatctttgatgcata 200  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||          |||||||||| |||    
12009479 ttattgaaagatgaatttgaattccaatttgattagca-tttaaaaggaattgtcaaaaaattgattaaatctgcaatttttttttatctttgatgaata 12009381  T
201 tgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||    
12009380 tgaaagttttaatactttatttattggacttgtttgaaatgttaagagtagaacaatgaaggaa 12009317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 51986462 - 51986199
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||   |||    
51986462 tatttaatttcaatttgcatgaaaaatgcttcaatttcaacttcggatgtccccaaaggaaattattgaacgatcaaaacaaaacaaagccaaa---gta 51986366  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag---nnnnnnnnnatctttgatgc 197  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||     
51986365 ttattgaaagatgaatttgaattccaatttgattagcattttaaaaggaattgtcaaaaaattgattaaatctgcagttttttttttttatctttgatga 51986266  T
198 atatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
51986265 atatgaaagttttaacattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 51986199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 47668658 - 47668927
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||    
47668658 tatttaatttcaatttgcagaaaaaatgcttcaatttcaacttcggatgtccccaaagagaattattgaacgatcaaaacaaaacaaagccaaatcgata 47668757  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtc-aaaaaattgattaaatctgcag------nnnnnnnnnatctttg 193  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||               |||||||    
47668758 ttattgaaagatgaatttgaattccaatttgattagca-tttaaaaggaattgtcaaaaaaattgattaaatctacagtttttttttttttttatctttg 47668856  T
194 atgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47668857 atgaatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 47668927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 34053779 - 34053512
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
34053779 tatttaatttcaatttgcagaaaaaatacttcattttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaagccaaatcggta 34053680  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgca-----gnnnnnnnnnatctttgat 195  Q
    |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||               |||||||||    
34053679 ttattgaaagatgaatttgaattccaatttgattatca-tttaaaaggaattgtcaaaaaattgattaaatctgcaattttatttttttttatctttgat 34053581  T
196 gcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34053580 gaatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 34053512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6534687 - 6534963
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
6534687 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaagccaaatcggta 6534786  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag-------------nnnnnnnnna 187  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||                      |    
6534787 ttattgaaagatgaatttgaattccaatttgattagtattttaaaaggaattgtcaaaaaattgattaaatctgcagtttttttttttatatttttttta 6534886  T
188 tctttgatgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||    
6534887 tctttgatgaatatgaaagttttaacattttatttattggacttgtttgaaatattaagagtagatcaatgaaggaa 6534963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 26762060 - 26761884
Alignment:
1 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggtcaaaacaaaacaaagccaaatcggta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
26762060 tatttaatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaagccaaatcggta 26761961  T
101 ttattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag 177  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
26761960 ttattgaatgatgaatttgaattccaatttgattagcattttaaaaggaattgtcaaaaaattgattaaatctgcag 26761884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 26761860 - 26761783
Alignment:
187 atctttgatgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
26761860 atctttgatgaatatgaaaggtttaacattttatttattgggcttgtttgaaatattaagagtagaacaataaaggaa 26761783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 43068445 - 43068621
Alignment:
5 taatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacggt-----caaaacaaaacaaagccaaatcggt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     |||||||||||||||||||||||||    
43068445 taatttcaatttgcaggaaaaatgcttcaatttcaacttcggatgtccccaaagggaattattgaacgatcaaaacaaaacaaaacaaagccaaatcggt 43068544  T
100 attattgaaagatgaatttgaattccaatttaattagcattttaaaaggaattgtcaaaaaattgattaaatctgca 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
43068545 attattgaaagatgaatttgaattccaatttgattagcattttaaaaggaattgtcaaaaaattgattaaatctgca 43068621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 43068645 - 43068722
Alignment:
187 atctttgatgcatatgaaagttttaatattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 264  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
43068645 atctttgatgaatatgaaagttttaacattttatttattgggcttgtttgaaatattaagagtagaacaatgaaggaa 43068722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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