View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_high_3 (Length: 529)
Name: NF14238_high_3
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 17820520 - 17821035
Alignment:
| Q |
1 |
atttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtttactgtgaacatgctgttgatacaaaatcttgcttagctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17820520 |
atttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtttactgtgaacatgctgttgatacaaaatcttgcttagctc |
17820619 |
T |
|
| Q |
101 |
atgtatcggaagtatctcacattccaactttggtcacgacaaaagaccaaaacttgcatgtactcttgtccttattaaccaagtccaccacacacattca |
200 |
Q |
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| T |
17820620 |
atgtatccgaagtatctcacgttccaactttggtcacgacaaaagaccaaaacttgcatgtactcttgtccttattaacaaagtccaccacacacattca |
17820719 |
T |
|
| Q |
201 |
aaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatggacttgtccatg |
300 |
Q |
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| T |
17820720 |
aaatgctatggacacagccagtgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatggacttgtccatg |
17820819 |
T |
|
| Q |
301 |
aacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctcactaaccatgcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17820820 |
aacagaatttgggacacgatgttaaagctaacaaaaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctcactaaccatgcaa |
17820919 |
T |
|
| Q |
401 |
cttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgaccttcaggacttgatatcaagagctagatcttctctagctgtgtttcttgt |
500 |
Q |
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| T |
17820920 |
cttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgaccttcaggacttgatatcaagagctagatcttctctagctgtgtttcttgt |
17821019 |
T |
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| Q |
501 |
tgtttttcctcaaaag |
516 |
Q |
| |
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|||||||||||||||| |
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| T |
17821020 |
tgtttttcctcaaaag |
17821035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 64 - 488
Target Start/End: Original strand, 17806808 - 17807232
Alignment:
| Q |
64 |
tgtgaacatgctgttgatacaaaatcttgcttagctcatgtatcggaagtatctcacattccaactttggtcacgacaaaagaccaaaacttgcatgtac |
163 |
Q |
| |
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||||||||||| ||||||||||| || |||||| |||||||| | || ||| ||| | |||| |||| || ||||||||||| || ||| | || |
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| T |
17806808 |
tgtgaacatgcagttgatacaaactcatgcttaactcatgtagctgaggtagttcaaggttcaaccttggacaacacaaaagaccacaaattgagtacac |
17806907 |
T |
|
| Q |
164 |
tcttgtccttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgc |
263 |
Q |
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|| | || || |||||||| |||||||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17806908 |
tcatatcgttgttaaccaaatccaccacacacattcgaaaggccatggacacggctaatgttatcaaacgccgaattaacagccctagagaagaaaatgc |
17807007 |
T |
|
| Q |
264 |
tttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgca |
363 |
Q |
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||||| || ||||||| |||||||| ||||||||||| | ||| |||||||| | |||||| || |||| | ||||||| |||||||||||||||||| |
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| T |
17807008 |
tttgaatgtctgtgaaaaactaatgaacttgtccatggaaagagtttgggactcagtgttaactctcacaaaagataatatggactcacagcaagatgca |
17807107 |
T |
|
| Q |
364 |
catacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgaccttcaggacttga |
463 |
Q |
| |
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|| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||| |||||||||| | |
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| T |
17807108 |
cacacttggctaagtagtgtgctcacaaaccatgcaacttgtttggatggattagaaggtacgtctcgggctgttatggaaaatgacattcaggacttaa |
17807207 |
T |
|
| Q |
464 |
tatcaagagctagatcttctctagc |
488 |
Q |
| |
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|| ||||||||||||| |||||||| |
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| T |
17807208 |
tagcaagagctagatcatctctagc |
17807232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 172 - 485
Target Start/End: Original strand, 17776224 - 17776537
Alignment:
| Q |
172 |
ttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtg |
271 |
Q |
| |
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||||||||||| |||||| ||||||||| ||| || |||||||| || ||||| |||||||||||| |||| ||||||||||| ||||||||||||| || |
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| T |
17776224 |
ttattaaccaaatccaccgcacacattcgaaaggcaatggacacggctaatgtgatcaaacgccgagttaatagccctagagaggaaattgctttgaatg |
17776323 |
T |
|
| Q |
272 |
actgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatg |
371 |
Q |
| |
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||||||| || ||||||| ||||||||| | ||| |||||||| | |||| | ||||| | |||||| |||||||||||||| |||||||| ||||| |
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| T |
17776324 |
actgtgaggaattaatggatttgtccatggatagagtttgggactcagtgttgactctaaccaaaaataacattgactcacagcatgatgcacacacatg |
17776423 |
T |
|
| Q |
372 |
gctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctcgggtcgttatggaaaatgaccttcaggacttgatatcaaga |
471 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| || ||| |
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| T |
17776424 |
gctaagtagtgtgctcactaaccatgcaacttgtttggatggattagaaggttcatctcgggtcgttatggagagtgatcttcatgacttgatctccaga |
17776523 |
T |
|
| Q |
472 |
gctagatcttctct |
485 |
Q |
| |
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|||||||||||||| |
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| T |
17776524 |
gctagatcttctct |
17776537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 17776116 - 17776165
Alignment:
| Q |
64 |
tgtgaacatgctgttgatacaaaatcttgcttagctcatgtatcggaagt |
113 |
Q |
| |
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||||| |||||| ||||||||||||| |||||| |||||||||| ||||| |
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| T |
17776116 |
tgtgagcatgctcttgatacaaaatcatgcttaactcatgtatcagaagt |
17776165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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