View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_10 (Length: 330)
Name: NF14238_low_10
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 43622888 - 43623189
Alignment:
| Q |
19 |
attatgtaccatataaattgtttttggagtacactattaatttatgtgagaatatggtatttcaggatcgaaagtttgaaaataaagacggttgctggga |
118 |
Q |
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| T |
43622888 |
attatgtaccgtataaattgtttttggagtacgctattaatttatgtgagaatatggtatttcaggatcgaaagtttgaaaataaagacggttgctggga |
43622987 |
T |
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| Q |
119 |
ttgctaagttggtaggcattgtggcatgtttggctggtgcagctacccttgccttttataaaggtcctcatttacaacttttaagtcatcatcatcacct |
218 |
Q |
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| T |
43622988 |
ttgctaagttggtaggcattgtggcatgtttgggtggtgcagctacccttgccttttataaaggtcctcatttacaacttttaagtcatcatcatcacct |
43623087 |
T |
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| Q |
219 |
tctgggataccataaacaacatgatcaaagtcattctccatctggtacatggataaaaggttgctttttcttactgctctgcaacacattttggggccta |
318 |
Q |
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| T |
43623088 |
tctgggataccataaacaacatgatcaaagtcattctccatctggtacatggataaaaggttgctttttcttactgctcagcaacacattttggggccta |
43623187 |
T |
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| Q |
319 |
tg |
320 |
Q |
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| T |
43623188 |
tg |
43623189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 42709574 - 42709497
Alignment:
| Q |
55 |
ttaatttatgtgagaatatggtatttcaggatcgaaagtttgaaaataaagacggttgctgggattgctaagttggta |
132 |
Q |
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| T |
42709574 |
ttaatttatgtaagaatatggtatttcaggattgaaagtttgaaaataaagacgggggctgggattgctaagctggta |
42709497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 42709498 - 42709448
Alignment:
| Q |
162 |
tacccttgccttttataaaggtcctcatttacaacttttaagtcatcatca |
212 |
Q |
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| T |
42709498 |
tacccttgccttttataaaggtcctcaattaaaacttttaagtcatcatca |
42709448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 38765318 - 38765442
Alignment:
| Q |
77 |
atttcaggatcgaaagtttgaaaataaagacggttgctgggattgctaagttggtaggcattgtggcatgtttggctggtgcagctacccttgcctttta |
176 |
Q |
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| T |
38765318 |
atttcagaatcgaagttttgagagtaaagacagctgctggggctgctaagttggctggtgttgtggcatgtttgggtggagcagcaacccttgcttttta |
38765417 |
T |
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| Q |
177 |
taaaggtcctcatttacaactttta |
201 |
Q |
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| T |
38765418 |
taaaggtcctcaattggaactttta |
38765442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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