View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14238_low_15 (Length: 238)

Name: NF14238_low_15
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14238_low_15
NF14238_low_15
[»] chr4 (4 HSPs)
chr4 (20-236)||(36230230-36230446)
chr4 (20-167)||(13738926-13739072)
chr4 (22-167)||(13736860-13737005)
chr4 (45-111)||(26888983-26889049)
[»] chr5 (2 HSPs)
chr5 (20-224)||(11240538-11240742)
chr5 (19-117)||(22278742-22278840)
[»] chr3 (2 HSPs)
chr3 (20-224)||(11759233-11759437)
chr3 (20-111)||(51847197-51847288)
[»] chr8 (2 HSPs)
chr8 (24-224)||(129659-129847)
chr8 (20-165)||(34905566-34905710)
[»] chr7 (3 HSPs)
chr7 (20-224)||(15746186-15746382)
chr7 (18-177)||(44213025-44213184)
chr7 (19-117)||(17335521-17335619)
[»] chr6 (5 HSPs)
chr6 (20-224)||(1569929-1570125)
chr6 (17-224)||(7656662-7656861)
chr6 (24-177)||(34957380-34957533)
chr6 (17-125)||(7672784-7672892)
chr6 (19-117)||(24026186-24026284)
[»] chr1 (1 HSPs)
chr1 (20-169)||(48735237-48735385)
[»] chr2 (3 HSPs)
chr2 (20-167)||(15572575-15572721)
chr2 (59-165)||(43881649-43881755)
chr2 (18-96)||(18457526-18457604)
[»] scaffold0604 (1 HSPs)
scaffold0604 (71-176)||(7643-7748)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 36230446 - 36230230
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| ||||||    
T  36230446 cattaacttaaattccatcttcttgaacaagattgttaaattttatttcactttccgttaaagtttggagattgcaacttagtttggtttctagatctga 36230347  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttg 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36230346 attcatgaaatctcattgttgatttctgaaatctttaaacttgaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttg 36230247  T
Q  220 ttgaaaacttaattaac 236  Q
    |||||||||||||||||    
T  36230246 ttgaaaacttaattaac 36230230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 13738926 - 13739072
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||||  ||||| | |||||||||||| ||| |||||||| ||||  || ||||||| |||||||| |||||| || ||  || |||||     
T  13738926 cattaacttaaattct-tcttcatcaacaaaattgttcaatattatttcattttcttttgaagtttggagattgcagcttagtgtggttcatagatctgg 13739024  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggt 167  Q
    |||||| ||||||| | ||||||||||||||||||| |||||||||||    
T  13739025 attcattaaatctcttggttgatttctgaaatctttcaacttaaaggt 13739072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 13736860 - 13737005
Alignment:
Q  22 ttaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctgaat 121  Q
    |||||||||| | | ||||| | |||||||||||| ||| |||||||| ||||  || ||||||| |||||||| |||||| || ||  || ||||| ||    
T  13736860 ttaacttaaagttcttcttcatcaacaaaattgttcaatattatttcattttcttttgaagtttggagattgcagcttagtgtggttcatagatctggat 13736959  T
Q  122 tcatgaaatctcattgttgatttctgaaatctttaaacttaaaggt 167  Q
    |||| ||||||| | ||||||||||||||||||| |||||||||||    
T  13736960 tcattaaatctcttggttgatttctgaaatctttcaacttaaaggt 13737005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 26889049 - 26888983
Alignment:
Q  45 aacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttct 111  Q
    ||||||| |||| ||| |||||||| ||||| || ||||||| |||||||| |||||||||||||||    
T  26889049 aacaaaactgttcaatattatttcattttcctttgaagtttggagattgcagcttagtttgatttct 26888983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 11240742 - 11240538
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||     
T  11240742 cattaacttaaatttcatctttttgaacaagattgttaaattttatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctgg 11240643  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttg 219  Q
    ||||||  |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11240642 attcattgaatctcattgttgatttctgaaatctttgaacttgaaggtatgtataagaatttgttaaacatatttaattctttattatgatgtaaggttg 11240543  T
Q  220 ttgaa 224  Q
    |||||    
T  11240542 ttgaa 11240538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 22278840 - 22278742
Alignment:
Q  19 acattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatct 117  Q
    ||||||| ||||||| || |||| | ||||| |||||| ||||||||||||| || ||||  |||||| |||||||||||||||||| |||||| ||||    
T  22278840 acattaagttaaatttcagcttcctcaacaacattgttcaattttatttcacatttcattgcagtttggagattgcaacttagtttggtttctagatct 22278742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 11759233 - 11759437
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||| |||||     
T  11759233 cattaacttaaatttcatctttttgaacaagattgttaaattttatttcactttccattgaagtttggagatttcaacttagtttggtttctagatctgg 11759332  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttg 219  Q
    |||||| ||||||||||| ||||||||||||||||  ||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||     
T  11759333 attcattaaatctcattgctgatttctgaaatcttcgaacttgaaggtatgtataagaatttgttaaaaatatttaattctttattatgatgtaaggttt 11759432  T
Q  220 ttgaa 224  Q
    |||||    
T  11759433 ttgaa 11759437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 51847197 - 51847288
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttct 111  Q
    |||||||||||| | | ||||| | ||||||| |||| ||| |||||||| ||||| || |||||||||||||||| |||||||||||||||    
T  51847197 cattaacttaaagttcttcttcatcaacaaaactgttcaatattatttcattttcctttgaagtttgaagattgcagcttagtttgatttct 51847288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 129847 - 129659
Alignment:
Q  24 aacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctgaattc 123  Q
    |||||||||| ||||||||||||||| ||||||||||||||||             ||||||| |||||||||||||||||| |||||| ||||| ||||    
T  129847 aacttaaatttcatcttcttgaacaagattgttaaattttattg------------aagtttggagattgcaacttagtttggtttctagatctggattc 129760  T
Q  124 atgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttgttga 223  Q
    ||  |||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  129759 attgaatctcattgttgatttctgaaatctttgaacttgaaggtatgtataagaatctgttaaacatatttaattctttattatgatgtaaggttgttga 129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 34905566 - 34905710
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||||  ||||| | |||||||||||| ||| |||||||| ||||  || ||||||| |||||||| |||||| || ||| || |||||     
T  34905566 cattaacttaaattct-tcttcatcaacaaaattgttcaatattatttcattttcttttgaagtttggagattgcagcttagtgtggtttatagatctgg 34905664  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaag 165  Q
    |||||| ||||||| | ||||||||||||||||||| |||||||||    
T  34905665 attcattaaatctcttggttgatttctgaaatctttcaacttaaag 34905710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 15746382 - 15746186
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||     
T  15746382 cattaacttaaatttcatcttcttgaacaagattgttaaattttatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctgg 15746283  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttg 219  Q
    ||||||  || ||  | |||||||||||        |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  15746282 attcatataagctgttggttgatttctg--------aaacttgaaggtatgtataagaaattgttaaacatatttaattgtttattatgatgtatggttg 15746191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 44213025 - 44213184
Alignment:
Q  18 cacattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatct 117  Q
    |||||||||||||| |  || ||| | |||||| ||||| ||| | |||||| |||| ||| ||||||| | |||||| ||||||||| ||| || ||||    
T  44213025 cacattaacttaaaattgatattcatcaacaaagttgttcaatatcatttcattttctattgaagtttggaaattgcatcttagtttggtttttagatct 44213124  T
Q  118 gaattcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataaga 177  Q
    | ||| || ||||||  | ||||||||||||||||||||||||||||||||| |||||||    
T  44213125 ggatttattaaatctgttggttgatttctgaaatctttaaacttaaaggtatgtataaga 44213184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 17335521 - 17335619
Alignment:
Q  19 acattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatct 117  Q
    ||||||| ||||||| || |||| | ||||| |||||| ||||||||||||| || ||||| | |||| |||||||||||||||||| |||||| ||||    
T  17335521 acattaagttaaatttcagcttcctcaacaacattgttcaattttatttcacatttcattacaatttggagattgcaacttagtttggtttctagatct 17335619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 1569929 - 1570125
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||     
T  1569929 cattaacttaaatttcatcttcttgaacaagattgttaaattttatttcactttccattgaagtttggagattgcaacttagtttggtttctagatctgg 1570028  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaaggttg 219  Q
    ||||||  || ||  | |||||||||||        |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  1570029 attcatataagctgttggttgatttctg--------aaacttgaaggtatgtataagaaattgttaaacatatttaattgtttattatgatgtatggttg 1570120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 7656662 - 7656861
Alignment:
Q  17 acacattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatc 116  Q
    ||||||||||||| ||| ||||||||| || || |||||| |||| |||||||||||||||| ||||||| |||||||||||||||||| |||||| |||    
T  7656662 acacattaacttatatttcatcttcttcaataacattgttcaattatatttcactttccattgaagtttggagattgcaacttagtttggtttctagatc 7656761  T
Q  117 tgaattcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataagaatttgttaaacatatttaattatttattatgatgtaagg 216  Q
    || ||||||  ||  |  | |||||||| ||        |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||    
T  7656762 tggattcatagaagttgttggttgatttgtg--------aaacttgaaggtatgtataagaatttgttaaacatatttaattctttattatgatgtatgg 7656853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 34957380 - 34957533
Alignment:
Q  24 aacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctgaattc 123  Q
    |||||||||| | ||||||| ||||  |||||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |||||| || || ||||    
T  34957380 aacttaaatttcgtcttctttaacagcattgttcaattttatttcacttttcattgaagtttggagattgcaacttagtttggtttctagatttggattc 34957479  T
Q  124 atgaaatctcattgttgatttctgaaatctttaaacttaaaggtatatataaga 177  Q
    || |||||||||||||||||| || | ||||||||||||||| ||| |||||||    
T  34957480 attaaatctcattgttgatttatgcagtctttaaacttaaagatatgtataaga 34957533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 7672892 - 7672784
Alignment:
Q  17 acacattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatc 116  Q
    ||||||||||||| ||| ||||||||| ||  | |||||| |||| ||||| |||||||||| | ||||| |||||||||||||||||| |||||| |||    
T  7672892 acacattaacttatatttcatcttcttcaatgacattgttcaattatatttaactttccattgatgtttggagattgcaacttagtttggtttctagatc 7672793  T
Q  117 tgaattcat 125  Q
    |||||||||    
T  7672792 tgaattcat 7672784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 24026186 - 24026284
Alignment:
Q  19 acattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatct 117  Q
    ||||||| ||||||| || |||| | ||||| |||||| ||||||||||||| || ||||| | |||| |||||||||||||||||| |||||| ||||    
T  24026186 acattaagttaaatttcagcttcctcaacaacattgttcaattttatttcacatttcattacattttggagattgcaacttagtttggtttctagatct 24026284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 48735237 - 48735385
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    ||||||||||||||  |||||| | |||||| || || |||||||||| | |||||||| ||||||| |||||||| || ||||||||||||| |||||     
T  48735237 cattaacttaaatttgatcttcatcaacaaactt-ttcaattttattttattttccattgaagtttggagattgcatctcagtttgatttctagatctgg 48735335  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtat 169  Q
    ||| || || |||  | |||||||| ||||||||||||||||||||||||    
T  48735336 atttattaactctgttggttgatttatgaaatctttaaacttaaaggtat 48735385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 15572721 - 15572575
Alignment:
Q  20 cattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctga 119  Q
    |||||||||||||||  ||||| | |||||||||||| ||| |||||||| ||||  || ||||||| |||||||| |||||| || ||  || |||||     
T  15572721 cattaacttaaattct-tcttcatcaacaaaattgttcaatattatttcattttcttttgaagtttggagattgcagcttagtgtggttcatagatctgg 15572623  T
Q  120 attcatgaaatctcattgttgatttctgaaatctttaaacttaaaggt 167  Q
    |||||| ||||||| | ||||||||||||||||||| |||||||||||    
T  15572622 attcattaaatctcttggttgatttctgaaatctttcaacttaaaggt 15572575  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 43881755 - 43881649
Alignment:
Q  59 attttatttcactttccattaaagtttgaagattgcaacttagtttgatttctaaatctgaattcatgaaatctcattgttgatttctgaaatctttaaa 158  Q
    ||||||||| | |||||||| ||||||| |||||||| || ||||||||||||| ||||| ||| || ||||||  | ||||||||||||||||||||||    
T  43881755 attttattttattttccattgaagtttggagattgcatctcagtttgatttctagatctggatttattaaatctgttggttgatttctgaaatctttaaa 43881656  T
Q  159 cttaaag 165  Q
    |||||||    
T  43881655 cttaaag 43881649  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 18457604 - 18457526
Alignment:
Q  18 cacattaacttaaattccatcttcttgaacaaaattgttaaattttatttcactttccattaaagtttgaagattgcaa 96  Q
    ||||||||||||| || ||||||||| ||||||||||||  |||||||||||||||||||| ||||||| |||||||||    
T  18457604 cacattaacttaattttcatcttcttcaacaaaattgttccattttatttcactttccattgaagtttggagattgcaa 18457526  T

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Target: scaffold0604 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 7643 - 7748
Alignment:
Q  71 tttccattaaagtttgaagattgcaacttagtttgatttctaaatctgaattcatgaaatctcattgttgatttctgaaatctttaaacttaaaggtata 170  Q
    |||||||| ||||||| |||||||| ||||||||| ||| || ||||||||||||  ||  |  | || |||||||||||||||||||||| |||||||     
T  7643 tttccattgaagtttggagattgcatcttagtttggtttgtagatctgaattcattgaagatgttggtagatttctgaaatctttaaacttgaaggtatg 7742  T
Q  171 tataag 176  Q
    ||||||    
T  7743 tataag 7748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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