View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_18 (Length: 232)
Name: NF14238_low_18
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 14239458 - 14239657
Alignment:
| Q |
14 |
ccaagaatatgaatggtacaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttg |
113 |
Q |
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|||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14239458 |
ccaataatatgaatggtacaagaactcccccatatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttg |
14239557 |
T |
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| Q |
114 |
aacgagttggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctcttcgtgtgtgctagagatattttcttcttgttct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
14239558 |
aacgagttggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctcttcatgtgtgccagagatattttcttcttgttct |
14239657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 41437312 - 41437474
Alignment:
| Q |
19 |
aatatgaatggtacaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacga |
118 |
Q |
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|||||||| |||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41437312 |
aatatgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacga |
41437411 |
T |
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| Q |
119 |
gttggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctctt |
181 |
Q |
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| T |
41437412 |
gttggccttgcggttcgcctttatcatctgctttaccattttgctcatctttgtttgcctctt |
41437474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 41450538 - 41450700
Alignment:
| Q |
19 |
aatatgaatggtacaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacga |
118 |
Q |
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| T |
41450538 |
aatatgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacga |
41450637 |
T |
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| Q |
119 |
gttggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctctt |
181 |
Q |
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|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
41450638 |
gttggccttgcggttcgcctttatcatctgctttaccattttgctcatctttgtttgcctctt |
41450700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 14373891 - 14373693
Alignment:
| Q |
14 |
ccaagaatatgaatggtacaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttg |
113 |
Q |
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|||| |||||||||||||| | || ||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
14373891 |
ccaataatatgaatggtacgacagatcctccatatgcagttgtgatatacttccaatacaccgaaaacccaactttacctttctccctttcttcttcttg |
14373792 |
T |
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| Q |
114 |
aacgagttggccttgtggttcgcctttatcacctgatttaccattttgctcatctttgtttgcctcttcgtgtgtgctagagatattttcttcttgttc |
212 |
Q |
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||| |||||| || ||||||| |||||| ||| ||||||||||||| |||||||| |||||||||| || |||| ||||||| || |||||||||| |
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| T |
14373791 |
aacaagttggtttttcggttcgctattatcatctgctttaccattttgcacatctttggttgcctcttcatgagtgccagagatacttacttcttgttc |
14373693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 22749479 - 22749575
Alignment:
| Q |
31 |
acaagagctcccccgtatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttggcctt |
127 |
Q |
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|||||||| || || ||||| || || ||||| ||||| ||||| ||||| ||||||||||||| || ||||||||||||||||| ||||| |||| |
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| T |
22749479 |
acaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttgtcctt |
22749575 |
T |
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