View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_2 (Length: 575)
Name: NF14238_low_2
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 34687433 - 34687109
Alignment:
| Q |
14 |
aatatgtagtatgactttttaattcttctctttgtttgtcttcatatatgcattcatacttttgcaagtctgccacctgatcacatggttgttaacagta |
113 |
Q |
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| T |
34687433 |
aatatgtagtatgactttttaattcttctctttgtttgtcttcatatatgcattcatacttttgcaagtctgccacctgatcacatggttgttaacagta |
34687334 |
T |
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| Q |
114 |
ctcacatgtgctgaactgacagtagattatagctctcataattattgaatgtttagttggattagtggtgaatttgacaaagttagtattttcttagttt |
213 |
Q |
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| T |
34687333 |
ctcacatgcgctgaactgacagtagattatagctctcataattattgaatgtttagttggattagtggtgaatttgacaaagttagtattttcttagttt |
34687234 |
T |
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| Q |
214 |
tgtcaaactcactgtgatcctaaacaaatacaaaaaagaggctgtacaatgcaaggtcaatattacttatatttgatcttaccttttgtttgtcaaagct |
313 |
Q |
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| T |
34687233 |
tgtcaaactcactgtgatcctaaacaaatacaaaaaagaggctgtacaatgcaaggtcaatattacttatatttgatcttaccttttgtttgtcaaaact |
34687134 |
T |
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| Q |
314 |
acactttgtaaattttgcaaaatca |
338 |
Q |
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| T |
34687133 |
acactttgtaaattttgcaaaatca |
34687109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 337 - 559
Target Start/End: Complemental strand, 34687065 - 34686839
Alignment:
| Q |
337 |
catgggtcaattctggaatatttgaagctaattttgcacaattgaatcacattagtgtcttagtgttaatttgtataattcatactaaataaataaataa |
436 |
Q |
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| T |
34687065 |
catgggtcaattctggaatatttgaagctaattttgcacaattgaatcacattagtgtcttagtgttaatttgtataattcatactaaataaataaataa |
34686966 |
T |
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| Q |
437 |
----tttgcattgctttgcatgtagtcatacccatcaatgacagattacctaaagtctgggctatacaaatgggccggtgatgcagatagttatgagaaa |
532 |
Q |
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| T |
34686965 |
ataatttgcattgctttgcatgtagtcatacccatcaatgacagattacctaaagtctgggctatacaaatgggccggtgatgcagatagttatgagaaa |
34686866 |
T |
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| Q |
533 |
gatggtccctacattgagctggtaact |
559 |
Q |
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| T |
34686865 |
gatggtccctacattgagctggtaact |
34686839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 555
Target Start/End: Complemental strand, 43612874 - 43612783
Alignment:
| Q |
464 |
ccatcaatgacagattacctaaagtctgggctatacaaatgggccggtgatgcagatagttatgagaaagatggtccctacattgagctggt |
555 |
Q |
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| T |
43612874 |
ccatcaatggcagatttccagaaatcaggactatacaaatgggctggagatgcagagagttttaacaaagatggtccttacattgagctggt |
43612783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 37561069 - 37561102
Alignment:
| Q |
308 |
aaagctacactttgtaaattttgcaaaatcatgg |
341 |
Q |
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| T |
37561069 |
aaagctacactttgtagattttgcaaaatcatgg |
37561102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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