View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_4 (Length: 494)
Name: NF14238_low_4
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_4 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 125382 - 124913
Alignment:
| Q |
18 |
catttaaggaaatagatctgtgaatattagtatatattgtaaaagaaaacccatatttttatttcgtttgttaaggttccannnnnnnnn--aaacgttt |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
125382 |
catttaaggaaatagatctgagaatattagtatatattgtaaaagaaaacccatatttttatttcgtttgttaatgttccattttttttttaaaacgttt |
125283 |
T |
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| Q |
116 |
actttatatcaactttgttcaacatgtcaacttaaattattgtctgaaatgcatgtgcannnnnnnaaatgttttgtaaagtgaatgtgaaatcattgta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
125282 |
actttatatcaactttgttcaacatgtcaacttaaattattgtttgaaatgcatgtgcatttttttaaatattttgtaaagtgaatgtgaaatcattgta |
125183 |
T |
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| Q |
216 |
aaatgtcattgtcaacatgttttttacagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125182 |
aaatgtcattgtcaacatgttttttacagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgtt |
125083 |
T |
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| Q |
316 |
cgagttgttgatttatggactgttggaaattcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggtgatttttagttcaccaaactatg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
125082 |
cgagttgttgatttatggactgttggaaattcaaagaacaaacaacatattgagatggtggggtgcgacaaagaggtgatttttagttcaccaaactatg |
124983 |
T |
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| Q |
416 |
ttgttggtttataatatattgttgttataacaagtattttttgtttgcttctaattgccataagaataat |
485 |
Q |
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| T |
124982 |
ttgttggtttataatatattgttgttataacaagtattttttgtttgcttctaattgccataagaataat |
124913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 235 - 393
Target Start/End: Complemental strand, 22080028 - 22079870
Alignment:
| Q |
235 |
ttttttacagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatgga |
334 |
Q |
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|||||| ||||||||||||| |||||||| ||||| || || | | ||||||||| |||||| |||||||||||||||||||||||||||| | |||| |
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| T |
22080028 |
ttttttccagcaacaatggccaggcctttgcaaaagatcaagaacatcaatgatttcaaatctctgtggaaaattgctgttcgagttgttgacatgtgga |
22079929 |
T |
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| Q |
335 |
ctgttggaaattcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggtg |
393 |
Q |
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| T |
22079928 |
ctgttgcaaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaagaggtg |
22079870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 242 - 392
Target Start/End: Complemental strand, 23700320 - 23700170
Alignment:
| Q |
242 |
cagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatggactgttgg |
341 |
Q |
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|||||||||||||||||||||| ||||||| || | |||||||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||| |
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| T |
23700320 |
cagcaacaatggctaggcctttggaaaaaatcaagaacctcaatggttccaaatctctgtggaaaattgatgttcgagttgttgatttgtggactgttac |
23700221 |
T |
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| Q |
342 |
aaattcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggt |
392 |
Q |
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|||||||||| |||||||||||||||||||||| |||| ||||||||||| |
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| T |
23700220 |
taattcaaagagcaaacaacatattgagatggtgttgtgtgacaaagaggt |
23700170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 1522538 - 1522683
Alignment:
| Q |
246 |
aacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatggactgttggaaat |
345 |
Q |
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|||||||||||||||||| ||||| || || | |||||||||||| ||||| || |||||||| ||||||||||||||| | |||||||||| |||| |
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| T |
1522538 |
aacaatggctaggcctttgcaaaagatcaagaacctcaatgattccaaatccctg--gaaaattgttgttcgagttgttgacatgtggactgttgcaaat |
1522635 |
T |
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| Q |
346 |
tcaaagaacaaacaacatattgagatggtggtgtgcgacaaagaggtg |
393 |
Q |
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|||||||| ||||| ||||||||||||||| |||| |||||||||||| |
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| T |
1522636 |
tcaaagaagaaacagcatattgagatggtgttgtgtgacaaagaggtg |
1522683 |
T |
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