View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_5 (Length: 439)
Name: NF14238_low_5
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 38840878 - 38840467
Alignment:
| Q |
11 |
cacagaaagcagttcatcaacaccgatataagccaaacgaggtttcttcatggcagtagcagccaagggtccaagttcaacagcatttatgattccacaa |
110 |
Q |
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| T |
38840878 |
cacagaaagcagctcatcaacaccgatataagccaaacgaggtttcttcatggcagtagcagccaagggtccaagttcaacagcatttatgattccacaa |
38840779 |
T |
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| Q |
111 |
ccataatttgcctccaacttagccacattatctttgataccaaaaccaacgaaggtgtaatttggaagattaagaaaactaaccagtgattggggaaccc |
210 |
Q |
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| T |
38840778 |
ccataatttgactccaacttagccacattatctttgataccaaaaccaacgaaggtgtaatttggaagattaagaaaactaaccggtgattggggaaccc |
38840679 |
T |
|
| Q |
211 |
tttcataagcaccactaaacataataatgagatacgaaactccatcgcagaggtgcacagagctgcatttagacgatggtgaataaggaggcacatgcca |
310 |
Q |
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| T |
38840678 |
tttcataagcaccactaaacataataatgagatacgaaactccatcgcagaggtgcacagagctgcatttagacgatggtgaataaggaggcacatgcca |
38840579 |
T |
|
| Q |
311 |
ctcggcaccagacccaaaaaacctttgtcgtgtcataagctgggctcaagaaacgcgagatatagtcatcaacctcatgcggctcatccccatatacatc |
410 |
Q |
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| T |
38840578 |
ctcggcaccagacccaaaaaacctttgtcgtgtcataagctgggctcaagaaacgcgagatatagtcatcaacctcatgcggctcatccccatatacatc |
38840479 |
T |
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| Q |
411 |
atgatcatatac |
422 |
Q |
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| T |
38840478 |
atgatcatatac |
38840467 |
T |
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