View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14238_low_6 (Length: 430)
Name: NF14238_low_6
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 46289763 - 46290166
Alignment:
| Q |
16 |
tcaaaatttgccaacatgctcataatacagatagatcatacatgcaagaaaagtaactcccaccctgtcttacaaagcagaaataacacccttcctaatc |
115 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46289763 |
tcaaaatttgccaacatgttcatgatacagatagatcatacatgcaagaaaagtaactcccaccctgtcttacaaagcagaaataac-cccttcctaatc |
46289861 |
T |
|
| Q |
116 |
caagatacattgaatcacaatgcaaatataaccttatttgtagttcatcctccttttggtaatcatgaggaatggaaaagaacaaacnnnnnnntaacaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46289862 |
caagatacattgaatcacaatgcaaatataatcttatttgtagttcatcctccttttggtaatcatgaggaatggaaaagaacaaacaaaaaaataacaa |
46289961 |
T |
|
| Q |
216 |
attattcggaaacttaacacgccaaaataagcatatggtagaggctggctaac--agagaaaaataatttgagataaagattgattatttggaattaatg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289962 |
attattcggaaacttaacacgccaaaataagcatatggtagaggctggctaacaaagagaaaaataatttgagataaagattgattatttggaattaatg |
46290061 |
T |
|
| Q |
314 |
gaatgagaaaagctgatcgtaacaagtgtatacactttatatagtgatc---tgtcataactaaagcttaagtaatttgcaactaatcttaaacaacttg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46290062 |
gaatgagaaaagctgatcgtaacaagtgtatacactttatatagtgatcataagtcataactaaagcttaagtaatttgcaactaatcttaaccaacttg |
46290161 |
T |
|
| Q |
411 |
taact |
415 |
Q |
| |
|
||||| |
|
|
| T |
46290162 |
taact |
46290166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 11708318 - 11708367
Alignment:
| Q |
275 |
aaataatttgagataaagattgattatttggaattaatggaatgagaaaa |
324 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
11708318 |
aaataaattgagagaaagattgattatttggaattgatagaatgagaaaa |
11708367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 45518838 - 45518888
Alignment:
| Q |
269 |
agagaaaaataatttgagataaagattgattatttggaattaatggaatga |
319 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| |||| || |||||| |
|
|
| T |
45518838 |
agagaaaaataaattgagagaaagattgattatttgaaattgatagaatga |
45518888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 40550 - 40488
Alignment:
| Q |
266 |
aacagagaaaaataatttgagataaagattgattatttggaattaatggaatgagaaaagctgat |
330 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
40550 |
aacaaagaaaaataaattgaga--aagattgattatttggaatagatagaatgagaaaagttgat |
40488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University