View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_7 (Length: 427)
Name: NF14238_low_7
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 20146998 - 20147307
Alignment:
| Q |
1 |
agaagttgaaaacgaaaccatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgacagtccaagaagggataaatatatt |
100 |
Q |
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| T |
20146998 |
agaagttgaaaacgaaatcatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgatagtccaagaagggataaatatatt |
20147097 |
T |
|
| Q |
101 |
tgatcctgactggttgttgaacaatgattgttttaaattaatctcaagaaaatggtggtggtggtttgaactgtgaaactttttataagaaaatggtgga |
200 |
Q |
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| T |
20147098 |
tgatcttgactgattgttgaacgatgattgttttaaattaatctcaagaaaatggtggtagtggtttgaacagtgaaactttttataagaaaacgatgga |
20147197 |
T |
|
| Q |
201 |
tggaggtggcggtagggttgagttttggtggatgaaatggtgcgtctgacaactagcacagggaagttactattattgactttctgtccatagaaataca |
300 |
Q |
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| T |
20147198 |
tggaggtggcggtagggttgagttttggtggatgaaatggtgcgtctgacaactagcacagggaagttactattattgactttctgtccatagaaataca |
20147297 |
T |
|
| Q |
301 |
atgaatgaag |
310 |
Q |
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|||||||||| |
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| T |
20147298 |
atgaatgaag |
20147307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 20147339 - 20147402
Alignment:
| Q |
344 |
gttaaacgtgaaaagccaaccggtagccaannnnnnnnattaaaatacagattacgtggtccaa |
407 |
Q |
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| T |
20147339 |
gttaaacgtgaaaagccaaccggtagccaaaaaaaattattaaaatacagattacgtggtccaa |
20147402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 25100673 - 25101076
Alignment:
| Q |
1 |
agaagttgaaaacgaaaccatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgacagtccaagaagggataaatatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25100673 |
agaagttgaaaacgaaaccatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgaaagtccaagaagggataaatatatt |
25100772 |
T |
|
| Q |
101 |
tgatcctgactggtt-gttgaacaatgattgttttaaattaatctcaagaaaatggtggtggtggtttgaactgtgaaactttttataagaaaatggtgg |
199 |
Q |
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||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
25100773 |
tgatcttgactggtttgttgaacgatgattgttttaaattaatctcaagaaaatggtggtagtggtttgaactgtgaaactttttataagaaaaaggtgg |
25100872 |
T |
|
| Q |
200 |
atggaggtggcggtagggttgagttttggtggatgaaatggtgcgtctgacaactagcacagggaagttactattattgactttctgtccatagaaatac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
25100873 |
atggaggtggcggtagggttgagttttggtggatgaaatggtg---ctgacaactagcataggcaagttactattattgactttctgtccatagaaatac |
25100969 |
T |
|
| Q |
300 |
aatgaatgaagnnnnnnnnnagcaaacaatgnnnnnnnnnnnnngttaaacgtgaaaagccaaccggtagccaannnnnnnnattaaaatacagattacg |
399 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25100970 |
aatgaatgaagtttttttttagcaaacaatg-aaaaattaaaaagttaaacgtgaaaagccaaccggtagccaattttttttattaaaatacagattacg |
25101068 |
T |
|
| Q |
400 |
tggtccaa |
407 |
Q |
| |
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|||||||| |
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|
| T |
25101069 |
tggtccaa |
25101076 |
T |
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