View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14238_low_9 (Length: 375)
Name: NF14238_low_9
Description: NF14238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14238_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 4645241 - 4645580
Alignment:
| Q |
23 |
aagtccgacaaagaattgttactcaaattcaaactcacgctaaaagagtgcttacaaatcatacatcaaattaacataggaagttaaactcacaatcttg |
122 |
Q |
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| T |
4645241 |
aagtccgacaaagaattgttactcaaattcaaactcacgctaagagagtgcttacaaatcatacatcaaattaacataggaagttaaactcacaatcttg |
4645340 |
T |
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| Q |
123 |
cagacgagtcaacaacttaccaactaaagtagttttaaggacaaatttctataattaacattgtagttttaaggaactttaggttgaaggaaggtgtatt |
222 |
Q |
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| T |
4645341 |
cagacgagtcaacaacttaccaactaaagtagttttaagggcaaatttctataattaacattgtacttttaaggaactttaggttgaaggaaggtgtact |
4645440 |
T |
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| Q |
223 |
aaaatggtaaagtg-ttttgtgtattagcacgtgatccatgcattttttctctttgactgtcgtcataacatgcttggtcaaaagaacatcaaatctaat |
321 |
Q |
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| T |
4645441 |
aaaatggtaaagtgtttttgtgtattagcacgtgatccatgcattttttctctttgactgtcgtcataacatgcttggtcaaaagaacatcaaatctaat |
4645540 |
T |
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| Q |
322 |
tcccaattccattgtcaaaagaatatcaaatccagttccc |
361 |
Q |
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| T |
4645541 |
tcccaattccattgtcaaaagaatatcaaatccagttccc |
4645580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 23702924 - 23702855
Alignment:
| Q |
284 |
gtcataacatgcttggtcaaaagaacatcaaatctaattcccaattccattgtcaaaagaatatcaaatc |
353 |
Q |
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| T |
23702924 |
gtcatgacacgctttgtcaaaagaatatcaaatccaatttccaattccattctctaaagaatatcaaatc |
23702855 |
T |
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