View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_high_11 (Length: 311)
Name: NF14239_high_11
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_high_11 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 7573626 - 7573890
Alignment:
| Q |
22 |
attacatttaaaaaattagggacttatattcaagtattcaatttagtataaaagaaaaaagcttatataattagagacagatggacaaaacataagctaa |
121 |
Q |
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||||||||||||||| |||||||||||||| |||||| ||||||| |||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
7573626 |
attacatttaaaaaaatagggacttatatttaagtatgcaatttataataaaa---aaaaggttata--attagagacagatggacaaaacataa----- |
7573715 |
T |
|
| Q |
122 |
atcacattagcatttagttctattggtttaatgtgttgactgtttagctatctatannnnnnnnacaatgctatctaattataatgaaatgcnnnnnnng |
221 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| |||| | |
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| T |
7573716 |
atcacattagcatttagttctattggtttaatgtgtttattgtttagctatctatattttttttacaatgctatctaattataattaaatttccaaaaag |
7573815 |
T |
|
| Q |
222 |
ttatatgtcagaattctagcttcaatatgatcatttaattcatgattttagttatcatgataccgccatgtatat |
296 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7573816 |
ttatatgtcagaattctagcttcaatgtgatcatttaattcatgattttagttatcatgataccgccatgtatat |
7573890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 255664 - 255383
Alignment:
| Q |
11 |
tcaaaacacatattacatttaaaaaattagggacttatattcaagtattcaatttagtataaaagaaaaaagcttatataattagagacagatggacaaa |
110 |
Q |
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|||||||||||||||| ||||||||| | |||||||||||| |||||| |||||| ||| ||||||||| |||||||||||||||||||| ||| |
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| T |
255664 |
tcaaaacacatattacgtttaaaaaaatcgggacttatatttaagtatgaaatttataata----aaaaaagct--tataattagagacagatggagaaa |
255571 |
T |
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| Q |
111 |
acataagctaaatcacattagcatttagttctattggtttaatgtgttgactgtttagctatc--tatannnnnnnnacaatgctatctaattataatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| | | |||||||||||||| |
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| T |
255570 |
acataagctaaatcacattagcatttagttctattggtttaatgtgtttactgtttagctatctttatgttttttttacaacgttgtctaattataatga |
255471 |
T |
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| Q |
209 |
aatgcnnnnnnngttatatgtcagaattctagcttcaatatgatcatttaattcatgattttagttatcatgataccgccatgtatat |
296 |
Q |
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| T |
255470 |
aatgcaaaaaaagttatatgtcagaattctagcttcaatgtgatcatttaattcatgatttgagttatcatgatactgccatgtatat |
255383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 87 - 296
Target Start/End: Original strand, 14171978 - 14172191
Alignment:
| Q |
87 |
tataattagagacagatggacaaaacataagctaaatcacattagcatttagttctattggtttaatgtgttgact----gtttagctatctatannnnn |
182 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||| |
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| T |
14171978 |
tataattagagacggatggacaaaacataagctaaatcacattagcatttagttatattggcttaatgtgtttacttactgtttagctatctatgttttt |
14172077 |
T |
|
| Q |
183 |
nnnacaatgctatctaattataatgaaatgcnnnnnnngttatatgtcagaattctagcttcaatatgatcatttaattcatgattttagttatcatgat |
282 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14172078 |
ttcacaatgctatctaattataatgaaatgcaaaaaaagttatatgtcggaattctagcttcaatgtgatcatttaattcatgattttagttatcatgat |
14172177 |
T |
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| Q |
283 |
accgccatgtatat |
296 |
Q |
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|||||||||||||| |
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| T |
14172178 |
accgccatgtatat |
14172191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 949324 - 949608
Alignment:
| Q |
11 |
tcaaaacacatattacatttaaaaaattagggacttatattcaagtattcaatttagtataaaagaaaaaagcttatataattagagacagatggacaaa |
110 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||| |||| ||||| |||||||| ||||||||||| |
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| T |
949324 |
tcaaaacacatattatgtttaaaaaaatagggacttatattaaagtatgcaatttataataaac----aaagtttata--attagagatagatggacaaa |
949417 |
T |
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| Q |
111 |
acataagctaaatcacattagcatttagttctattggtttaatgtgttgact----gtttagctatctatannnnnnnn-acaatgctatctaattataa |
205 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||| ||| || |||||||||||| |||||||||||||||||||| |
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| T |
949418 |
acataagctaaatcatattagcatttagttctattggtctaatgtgtttacttactgtatagctatctatatttttttttacaatgctatctaattataa |
949517 |
T |
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| Q |
206 |
tgaaatgcnnnnnnngttatatgtcagaattctagcttcaatatgatcatttaattcatgattttagttatcatgataccgccatgtatat |
296 |
Q |
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| T |
949518 |
tgaaatgcaaaaaaagttatatgtcagaattctagtttcaatgtgatcatttaatccatgattttacttatcatgataccgccatgtatat |
949608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 14171520 - 14171575
Alignment:
| Q |
11 |
tcaaaacacatattacatttaaaaaattagggacttatattcaagtattcaattta |
66 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||| |
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| T |
14171520 |
tcaaaacacatattacgtttaaaaaaatagggacttatatttaagtatgcaattta |
14171575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 21055571 - 21055406
Alignment:
| Q |
11 |
tcaaaacacatattacatttaaaaaattagggacttatattcaagtattcaatttagtataaaagaa---aaaagcttatataattagagacagatggac |
107 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| || |||| || ||||||||||||||||||||| |
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| T |
21055571 |
tcaaaacacatattacatttaaaaaaatagggact--tattcaagtattcaatttataataaaataaaataaaaact--tataattagagacagatggac |
21055476 |
T |
|
| Q |
108 |
aaaacataagctaaatcacattagcatttagttctattggtttaatgtgttgactgtttagctatctata |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21055475 |
aaaacataagctaaatcacattagcatttagttctattggtttaatgtgtttactgtttagctatctata |
21055406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 40725445 - 40725245
Alignment:
| Q |
11 |
tcaaaacacatattacatttaaaaaat-tagggacttatattcaagtattcaatttagtataaaagaaaaaagcttatataattagagacagatggacaa |
109 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||||| |||||| ||||||| |||||| |||||||||||| ||||||||||||||||||| |
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| T |
40725445 |
tcaaaacacatattacgtttaaaaaaaataggaacttatatttaagtatgcaatttataataaaa--aaaaagcttata--attagagacagatggacaa |
40725350 |
T |
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| Q |
110 |
aacataagctaaatcacattagcatttagttctattggtttaatgtgttgactgtttagctatctata-nnnnnnnnacaatgctatctaattataatga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |
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| T |
40725349 |
aacataagctaaatcacattagcatttagttctattggtttaatgtgtttattgtttagctatctatatttttttttacaatgctatctaattataatga |
40725250 |
T |
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| Q |
209 |
aatgc |
213 |
Q |
| |
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||||| |
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| T |
40725249 |
aatgc |
40725245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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