View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_high_13 (Length: 302)

Name: NF14239_high_13
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_high_13
NF14239_high_13
[»] chr1 (1 HSPs)
chr1 (7-298)||(37942682-37942962)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 37942962 - 37942682
Alignment:
Q  7 gtattggtgacatataataattaagttaatcttaagatcttaaagatttgtttaagttttgttgattcatataacataaagagacaaatcggattaaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||| ||||||    
T  37942962 gtattggtgacatataataattaagttaatcttaagatcttaaagatttgtt-----------gattcatataacataaagagacaaatcggactaaaaa 37942874  T
Q  107 ctagtttgtactttaaaagttatggaagtcactaaaattaagcaagtactgagagatttgagtagtgtgtataaaatcatagattaaaactttaccatgc 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37942873 ctagtttgtactttaaaagttatggaagtcactaaaattgagcaagtactgagagatttgagtagtgtgtataaaatcatagattaaaactttaccatgc 37942774  T
Q  207 aaaaataaatttgaatagtatattatggtattcccgaagtgaatccatatattcttttgtacatcaagaaattgtgaatctaacatattctt 298  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37942773 aaaaataaatttgaatagtatattatggtattccagaagtgaatccatatattcttttgtacatcaagaaattgtgaatctaacataatctt 37942682  T

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