View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_high_14 (Length: 294)

Name: NF14239_high_14
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_high_14
NF14239_high_14
[»] chr2 (1 HSPs)
chr2 (1-239)||(32631637-32631875)
[»] chr6 (1 HSPs)
chr6 (101-159)||(6227750-6227808)
[»] chr8 (3 HSPs)
chr8 (121-158)||(3594581-3594618)
chr8 (120-159)||(3587853-3587892)
chr8 (121-157)||(3572664-3572700)
[»] chr7 (2 HSPs)
chr7 (119-162)||(2906353-2906396)
chr7 (112-157)||(36160031-36160076)
[»] chr1 (1 HSPs)
chr1 (121-161)||(42874604-42874644)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32631637 - 32631875
Alignment:
Q  1 attaaaccgcataaaattagatcgtatcaaaagnnnnnnnnaatgacaaatgttaatatgtcaattgttaggttcatattttatcaattataaggatttg 100  Q
    |||||||||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32631637 attaaaccgcataaaattagattgtatcaaaagttttttttaatgacaaatgttaatatgtcaattgttaggttcatattttatcaattataaggatttg 32631736  T
Q  101 aaccataaacctttaacaattttaatctcttagctcaaccaagtgagctacacatcccctctaaatatatcttatacatgcacacaacttatttatattc 200  Q
    |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32631737 aaccatgaacctttaacacttttaatctcttagctcaaccaaatgagctacacatcccctctaaatatatcttacacatgcacacaacttatttatattc 32631836  T
Q  201 aattatattagtagactttacaatatatagacacacact 239  Q
    ||||||||||||| ||||||| ||||||||||| |||||    
T  32631837 aattatattagtaaactttactatatatagacatacact 32631875  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 6227808 - 6227750
Alignment:
Q  101 aaccataaacctttaacaattttaatctcttagctcaaccaagtgagctacacatcccc 159  Q
    |||| |||| ||||||| |||||||| |||||||||||||||||||||||  |||||||    
T  6227808 aaccttaaatctttaactattttaatatcttagctcaaccaagtgagctatccatcccc 6227750  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 3594618 - 3594581
Alignment:
Q  121 tttaatctcttagctcaaccaagtgagctacacatccc 158  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3594618 tttaatctcttagctcaaccaagtgagctactcatccc 3594581  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 3587892 - 3587853
Alignment:
Q  120 ttttaatctcttagctcaaccaagtgagctacacatcccc 159  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  3587892 ttttaatcccttagctcaaccaagtgagctactcatcccc 3587853  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 3572700 - 3572664
Alignment:
Q  121 tttaatctcttagctcaaccaagtgagctacacatcc 157  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  3572700 tttaatctcttagctcaaccaagtgagttactcatcc 3572664  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 2906353 - 2906396
Alignment:
Q  119 attttaatctcttagctcaaccaagtgagctacacatcccctct 162  Q
    ||||||||||||||| |||||||||| || ||||||||||||||    
T  2906353 attttaatctcttagttcaaccaagtaagttacacatcccctct 2906396  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 36160076 - 36160031
Alignment:
Q  112 tttaacaattttaatctcttagctcaaccaagtgagctacacatcc 157  Q
    ||||||| |||||||| | ||||||||||||||||||||| |||||    
T  36160076 tttaacacttttaatcccctagctcaaccaagtgagctacccatcc 36160031  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 42874644 - 42874604
Alignment:
Q  121 tttaatctcttagctcaaccaagtgagctacacatcccctc 161  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  42874644 tttaatctgttagctcaaccaagtgagctacccaccccctc 42874604  T

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