View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_high_2 (Length: 643)

Name: NF14239_high_2
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_high_2
NF14239_high_2
[»] chr1 (1 HSPs)
chr1 (11-630)||(26217852-26218482)


Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 630
Target Start/End: Original strand, 26217852 - 26218482
Alignment:
Q  11 catagggtgaagcttgagtgatgcaaaatatttttaaaacttaagaagacatgtcaggccagtcaatcaattttcaaaagttagaaatatagcgtagtag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26217852 catagggtgaagcttgagtgatgcaaaatatttttaaaacttaagaagacatgtcaggccagtcaatcaattttcaaaagttaaaaatatagcatagtag 26217951  T
Q  111 gaatatcacatcaccgatgaaagattctaattcttacattcttgggatgagacaagttttaggtagtggaaaatatcttggtctcctattactggtaatt 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  26217952 gaatatcacatcaccggtgaaagattctaattcttacattcttggggtgagacaagttttaggtagtggaaaatatctgggtctcctattactggtaagt 26218051  T
Q  211 cgagnnnnnnnnncaccttcaaattcatctaagatagaatttgaaaaaagatcaactcatgaagtaatcaatgtctttctcaagtaggtagagaaatctt 310  Q
    ||||         ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  26218052 cgagaaaaaaaa-caccttcaaattcatctaagatagaatttgaaaaaagat-aactcatgaagtaatcgatgtctttctcaagtaggtagagaaatctt 26218149  T
Q  311 aattaaatatgtcctgcattcgatctcgtccaatgtgttgagcatattattactaccaactaatctttgtgtcaaaattgacaaaaatgatgaatttatt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26218150 aattaaatatgtcctgcattcgatctcgtccaatgtgttgagcatattattactaccaactaatctttgtgtcaaaattgacaaaaatgatgaatttatt 26218249  T
Q  411 ttggtga----------------ggtcaaatagatcttgggatagtttagatacacacaagaatgaatgtggtttcggatttaagtgcatatccactttc 494  Q
    |||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26218250 ttggtgaggtcaaatagatgtgaggtcaaatagatcttgggatagtttagatacacacaagaatgaatgtggtttcggatttaagtgcatatccactttc 26218349  T
Q  495 agtaatgccatattgccaaacagattggaaactactgtgatgtatggcgaagtataaggagtaataaattcattgtatgtgatggtcataggtggagcgt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26218350 agtaatgccatattgccaaacagattggaaactactgtgatgtatggcgaagtataaggagtaataaattcattgtatgtgatggtcataggtggagcgt 26218449  T
Q  595 aggcacaacatgcatattggtacagggaactaaatg 630  Q
    ||||   |||||||||||||||||||||||||||||    
T  26218450 aggc---acatgcatattggtacagggaactaaatg 26218482  T

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