View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_high_20 (Length: 245)
Name: NF14239_high_20
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 30505758 - 30505976
Alignment:
| Q |
10 |
ggagtagcaaaggaatgaagatacggaggggtcaacggttccatctgcgtgctcaacatagaaactgttgttattttgtaaagttgcagaggaaaagatt |
109 |
Q |
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| T |
30505758 |
ggagtagtaaaggaatgaagatacggaggggtcaacggttccatctgcgtgctcaacatagaaactgttgttattttgtaaagttgcagaggaaaagatt |
30505857 |
T |
|
| Q |
110 |
aaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagtacagaatagaaaataactgcccattgata |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30505858 |
aaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacgtacaaatagaaaagtacagaatagaaaataactgcccattgata |
30505957 |
T |
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| Q |
210 |
tcatgttcctataagttag |
228 |
Q |
| |
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||||||||||||||||||| |
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| T |
30505958 |
tcatgttcctataagttag |
30505976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 7038223 - 7038077
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
7038223 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
7038124 |
T |
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| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7038123 |
cagaatagaaaataactgcccactaatatcatgttcctataagttag |
7038077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 7033923 - 7033777
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
7033923 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
7033824 |
T |
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| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7033823 |
cagaatagaaaataactgcccactaatatcatgttcctataagttag |
7033777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 1541221 - 1541075
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
1541221 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
1541122 |
T |
|
| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
1541121 |
cagaatagaaaataactgcccactaatatcatgttcctataagttag |
1541075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 1545519 - 1545373
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
1545519 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
1545420 |
T |
|
| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1545419 |
cagaatagaaaataactgcccactaatatcatgttcctataagttag |
1545373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 26400854 - 26400708
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
26400854 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
26400755 |
T |
|
| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
26400754 |
cagaatagaaaataactgcccactaatatcatgttcctataagttag |
26400708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 26405152 - 26405006
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
26405152 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
26405053 |
T |
|
| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
26405052 |
cagaatagaaaataactgcccactaatatcatgttcctataagttag |
26405006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 28914509 - 28914351
Alignment:
| Q |
70 |
gaaactgttgttattttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttaca |
169 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||| |||| |
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|
| T |
28914509 |
gaaactgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaaattcttattcaattcaaacgtaca |
28914410 |
T |
|
| Q |
170 |
aatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
28914409 |
aatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttag |
28914351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 17793343 - 17793197
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
17793343 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagta |
17793244 |
T |
|
| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||| |
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|
| T |
17793243 |
cagaatagacaataactgcccactaatatcatgttcctataagttag |
17793197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 17797641 - 17797495
Alignment:
| Q |
82 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||| ||||| |
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| T |
17797641 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagta |
17797542 |
T |
|
| Q |
182 |
cagaatagaaaataactgcccattgatatcatgttcctataagttag |
228 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||| |
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|
| T |
17797541 |
cagaatagacaataactgcccactaatatcatgttcctataagttag |
17797495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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