View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_high_24 (Length: 213)

Name: NF14239_high_24
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_high_24
NF14239_high_24
[»] chr4 (4 HSPs)
chr4 (15-135)||(27360238-27360359)
chr4 (39-100)||(20355094-20355155)
chr4 (24-62)||(17349873-17349911)
chr4 (25-61)||(26654496-26654532)
[»] chr7 (4 HSPs)
chr7 (18-115)||(7578585-7578682)
chr7 (18-87)||(35339023-35339092)
chr7 (28-119)||(26617783-26617874)
chr7 (18-62)||(42129556-42129600)
[»] chr1 (7 HSPs)
chr1 (18-115)||(27417432-27417529)
chr1 (25-88)||(29547810-29547872)
chr1 (25-62)||(18640579-18640616)
chr1 (25-104)||(28201683-28201761)
chr1 (25-58)||(18643283-18643316)
chr1 (25-62)||(29530155-29530192)
chr1 (18-115)||(32808826-32808922)
[»] chr8 (2 HSPs)
chr8 (15-88)||(44711349-44711422)
chr8 (18-62)||(28621786-28621830)
[»] chr5 (3 HSPs)
chr5 (24-95)||(29948461-29948532)
chr5 (18-115)||(35105079-35105176)
chr5 (28-119)||(16633297-16633388)
[»] chr3 (3 HSPs)
chr3 (25-74)||(7642360-7642409)
chr3 (25-62)||(13639659-13639696)
chr3 (25-90)||(21587186-21587250)
[»] chr2 (4 HSPs)
chr2 (33-89)||(21294956-21295011)
chr2 (36-89)||(21289658-21289710)
chr2 (25-62)||(25232053-25232090)
chr2 (25-105)||(19912335-19912414)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 27360238 - 27360359
Alignment:
Q  15 aaatgaatagatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaagacacactt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||  |||||||||| |||    
T  27360238 aaatgaatagatggttagtggtccttaattactttgatcattcacttgttcatattgtatcctataaataggacttgtattatagtgtaaagacacgctt 27360337  T
Q  115 gtg-aaaaaataatacacaaag 135  Q
    ||| ||||||||||||| ||||    
T  27360338 gtgaaaaaaataatacataaag 27360359  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 20355155 - 20355094
Alignment:
Q  39 ttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataac 100  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||| ||||    
T  20355155 ttaattactttgatcattcagttgttcatattgtatcctataaataggactcatattttaac 20355094  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 17349873 - 17349911
Alignment:
Q  24 gatggttagtggtccttaattactttgatcattcacttg 62  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  17349873 gatggttagtggttcttaactactttgatcattcacttg 17349911  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 26654496 - 26654532
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcactt 61  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  26654496 atggttagtggtccttaattgctttgattattcactt 26654532  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 7578585 - 7578682
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaagacacacttg 115  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||   ||||||||||||||    
T  7578585 tgaatggatggtcagtggtccttaattactttgatcattcacttgcttatattgtatcctataaataggactcatattatagtataaagacacacttg 7578682  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 35339092 - 35339023
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaatagga 87  Q
    ||||| |||||||| ||||||||||||||||||||  ||||| || | ||||| ||||||||||||||||    
T  35339092 tgaatggatggttaatggtccttaattactttgatatttcacatgctcatattgtatcctataaatagga 35339023  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 26617874 - 26617783
Alignment:
Q  28 gttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaagacacacttgtgaa 119  Q
    |||||||| |||||||||  ||||||| |||||| || || ||  |||||||||||||| ||| ||||  |  |||||||||||||||||||    
T  26617874 gttagtggaccttaattatcttgatcactcacttattcatcttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaa 26617783  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 42129556 - 42129600
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcacttg 62  Q
    |||||| ||||||| || ||||||||| |||||||||||||||||    
T  42129556 tgaatatatggttaatgatccttaatttctttgatcattcacttg 42129600  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 27417529 - 27417432
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaagacacacttg 115  Q
    ||||| |||||||| |||| |||||||| |||||||||||||||  | ||||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  27417529 tgaatggatggttaatggttcttaattaatttgatcattcacttactcatattgtatcttataaataggactcgtattataatgtaaagacacacttg 27417432  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 29547810 - 29547872
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggac 88  Q
    ||||||||||||||||||||  |||||||||||||||| | || |||| |||||||||||||||    
T  29547810 atggttagtggtccttaatttgtttgatcattcacttgctcat-ttatgtcctataaataggac 29547872  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 18640616 - 18640579
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttg 62  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18640616 atggttagtggtccttaattgctttgatcattcacttg 18640579  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 28201761 - 28201683
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaa 104  Q
    ||||||||| ||| |||||| ||||||| ||||||||||| || |||| ||||||||||| ||||| |||| ||| ||||    
T  28201761 atggttagtagtctttaattgctttgataattcacttgttcat-ttatgtcctataaatatgactcatattttaatgtaa 28201683  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 18643316 - 18643283
Alignment:
Q  25 atggttagtggtccttaattactttgatcattca 58  Q
    |||||||||||||||||||| |||||||||||||    
T  18643316 atggttagtggtccttaattgctttgatcattca 18643283  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 29530155 - 29530192
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttg 62  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  29530155 atggttagtggtccttaattggtttgatcattcacttg 29530192  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 32808826 - 32808922
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaagacacacttg 115  Q
    |||||| ||||||||||||||||||||  |||||  ||||||||| | | ||||| | |||||||||  |||| |||| || ||||| ||||||||||    
T  32808826 tgaatatatggttagtggtccttaattgatttgaatattcacttgctca-attattttctataaataaaactcatattttagcgtaatgacacacttg 32808922  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 44711422 - 44711349
Alignment:
Q  15 aaatgaatagatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggac 88  Q
    |||||||| |||||||||||||| ||||||| |||||||||||| ||||| ||||| |||||||||||| ||||    
T  44711422 aaatgaatggatggttagtggtctttaattattttgatcattcatttgttcatattgtatcctataaatcggac 44711349  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 28621786 - 28621830
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcacttg 62  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||    
T  28621786 tgaatggatggttagtggtccttaattactttaatcattcacttg 28621830  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 29948532 - 29948461
Alignment:
Q  24 gatggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtatt 95  Q
    |||||||| |||||||||||||||||||||||||||||| | | ||| |||||||||||||  |||||||||    
T  29948532 gatggttactggtccttaattactttgatcattcacttgctcagattgtatcctataaataatactcgtatt 29948461  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 35105079 - 35105176
Alignment:
Q  18 tgaatagatggttagtggtccttaattactttgatcattcactt-gtttatattatatcctataaataggactcgtattataacgtaaagacacacttg 115  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| | | ||| | |||| |||||||||||||| |||| ||  ||||||||| |||||    
T  35105079 tgaatggatggttagtgatccttaattactttgatcattcactttgctcatactgtatc-tataaataggactcatattttagtgtaaagacatacttg 35105176  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 16633388 - 16633297
Alignment:
Q  28 gttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaagacacacttgtgaa 119  Q
    |||||||| |||||||||||||||||||||||||  | |  || | ||||||||||||| ||| |||| ||  | |||||||| ||||||||    
T  16633388 gttagtggaccttaattactttgatcattcacttactcaacttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaa 16633297  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 7642360 - 7642409
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttgtttatattatat 74  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  7642360 atggttagtggtccttaattactttgatcatttacttgcttatatcatat 7642409  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 13639659 - 13639696
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttg 62  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  13639659 atggttagtggtccttaattggtttgatcattcacttg 13639696  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 21587250 - 21587186
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactc 90  Q
    |||||||||| ||||||| | ||||||||||||||||| | || || | |||||||||||||||||    
T  21587250 atggttagtgatccttaactgctttgatcattcacttgctcat-ttgtgtcctataaataggactc 21587186  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 21295011 - 21294956
Alignment:
Q  33 tggtccttaattactttgatcattcacttgtttatattatatcctataaataggact 89  Q
    ||||||||||| |||||||||||||||||| | || || ||||||||||||||||||    
T  21295011 tggtccttaatgactttgatcattcacttgctcat-ttgtatcctataaataggact 21294956  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 21289710 - 21289658
Alignment:
Q  36 tccttaattactttgatcattcacttgtttatattatatcctataaataggact 89  Q
    ||||||||||||||||||||||||||| | || || | ||||||||||||||||    
T  21289710 tccttaattactttgatcattcacttgctcat-ttgtgtcctataaataggact 21289658  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 25232053 - 25232090
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttg 62  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  25232053 atggttagtggtccttaattggtttgatcattcacttg 25232090  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 19912335 - 19912414
Alignment:
Q  25 atggttagtggtccttaattactttgatcattcacttgtttatattatatcctataaataggactcgtattataacgtaaa 105  Q
    ||||||||| |||||||||| ||||||||| ||||||| | || || | |||||||||||||||   |||||||| |||||    
T  19912335 atggttagtagtccttaattgctttgatcactcacttgctcat-ttgtgtcctataaataggacctatattataatgtaaa 19912414  T

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