View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_high_8 (Length: 376)
Name: NF14239_high_8
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 47 - 361
Target Start/End: Original strand, 31414372 - 31414686
Alignment:
| Q |
47 |
taagggttttgttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatat |
146 |
Q |
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| T |
31414372 |
taagggttttgttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatat |
31414471 |
T |
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| Q |
147 |
atagattaaataatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataaagttagta |
246 |
Q |
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| T |
31414472 |
atagattaaataatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataaagttagta |
31414571 |
T |
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| Q |
247 |
tagcaccatatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactactctttcctccaaaacatggcttcaaccaccaaag |
346 |
Q |
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| T |
31414572 |
tagcaccatatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactactctttcctccaaaacatggcttcaaccaccaaag |
31414671 |
T |
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| Q |
347 |
actcagatttggaat |
361 |
Q |
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| T |
31414672 |
actcagatttggaat |
31414686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 284
Target Start/End: Original strand, 31410413 - 31410642
Alignment:
| Q |
58 |
ttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatatatagattaaat |
157 |
Q |
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| T |
31410413 |
ttattcatttgttgaacaacaaaaagtgatgaccgttggcacaactaattagttcaggaagtttcacagaaatgaccttaagggaatatatagattaaat |
31410512 |
T |
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| Q |
158 |
aatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataa----agttagtatagcacc |
253 |
Q |
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| T |
31410513 |
aatgaaataacacacgctgtttcaatgttcatttttgaataaacaatttcataaacaagagttgttgctatatatatataagtgtagtgagtagagca-c |
31410611 |
T |
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| Q |
254 |
atatccacaagtctcattgcttccacaaacg |
284 |
Q |
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| T |
31410612 |
atattcccaagtctcagtgcttccacaaacg |
31410642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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