View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_high_9 (Length: 329)
Name: NF14239_high_9
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 46554920 - 46554627
Alignment:
| Q |
18 |
caaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccgtccaacatcttaactcct |
117 |
Q |
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| T |
46554920 |
caaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccatccaccatcttaactcct |
46554821 |
T |
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| Q |
118 |
tgtcctctcacctcgtttcccatgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcatacgctatttgggttgaaaaaacgctttc |
217 |
Q |
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| T |
46554820 |
tgtcctctcacctcgtttcccatgtgcttaaagacgc-----------gtggtctttccttgtcttctgcatacgctatttgggttgaaaaaacgctttc |
46554732 |
T |
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| Q |
218 |
tctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcattaacaaggtaagttgttttatttttatttct |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554731 |
tctttacccttccttcaaagaaactattgctattaattataaggccactctccaatcacatgatttcattaacaaggtaagttgttttatttttatttct |
46554632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 296
Target Start/End: Original strand, 46531318 - 46531574
Alignment:
| Q |
40 |
ctgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccgtccaacatcttaactccttgtcctctcacctcgtttccca |
139 |
Q |
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| T |
46531318 |
ctgccggttccgagggtccgacgcaatgtcagcttctctccttccttggttcaaaatccattgatcatctcaactccttatccactcacctctttacctc |
46531417 |
T |
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| Q |
140 |
tgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcatacgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaa |
239 |
Q |
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| T |
46531418 |
tgtgcttgatgacgctgctccctttggtggaccacagttgtcttttgtcaactctgtgtggtttgaaaaatccctttctctttacccttccttcaaagaa |
46531517 |
T |
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| Q |
240 |
actattgctactaattataaggccactctccaatcacatgatttcattaacaaggta |
296 |
Q |
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| T |
46531518 |
attgttgatactaattattttgccactctcagatcacttgatttcataaacaaggta |
46531574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 46469889 - 46469957
Alignment:
| Q |
198 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
266 |
Q |
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| T |
46469889 |
tgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccact |
46469957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 46550190 - 46550126
Alignment:
| Q |
202 |
ttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
266 |
Q |
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||||| |||| ||||||||| | |||||||| || ||||||| |||||| |||||||||||||| |
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| T |
46550190 |
ttgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccact |
46550126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 9693292 - 9693228
Alignment:
| Q |
198 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggc |
262 |
Q |
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| T |
9693292 |
tgggtagagaaaaccctttctcttcaaccttccttcaaagaaaccatgtctactgattataaggc |
9693228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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