View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_low_1 (Length: 808)

Name: NF14239_low_1
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_low_1
NF14239_low_1
[»] chr5 (8 HSPs)
chr5 (21-802)||(9211605-9212396)
chr5 (237-404)||(35969972-35970130)
chr5 (18-127)||(35970225-35970335)
chr5 (18-88)||(9365141-9365211)
chr5 (30-88)||(12558818-12558876)
chr5 (19-88)||(9371492-9371561)
chr5 (30-82)||(9290790-9290844)
chr5 (18-80)||(9333217-9333276)
[»] chr6 (3 HSPs)
chr6 (23-147)||(24694848-24694973)
chr6 (424-534)||(24695355-24695466)
chr6 (237-399)||(24695138-24695293)
[»] chr8 (2 HSPs)
chr8 (41-88)||(31857545-31857592)
chr8 (38-96)||(44916500-44916559)
[»] chr7 (1 HSPs)
chr7 (18-83)||(6600816-6600881)
[»] chr4 (2 HSPs)
chr4 (38-89)||(40770879-40770930)
chr4 (38-87)||(40765016-40765065)
[»] chr3 (1 HSPs)
chr3 (30-84)||(48611282-48611336)


Alignment Details
Target: chr5 (Bit Score: 644; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 21 - 802
Target Start/End: Complemental strand, 9212396 - 9211605
Alignment:
Q  21 ggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaatttagtttaaatgttaat------tttcaaggctg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||    
T  9212396 ggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaatttagtttaaatgttaatgttaattttcaaggctg 9212297  T
Q  115 caccattaagcctattcaatattggaaaatattttgtttgaatttatctcataaa-ttgttttttgt-caaatctcggttttctaatagcatctttgttt 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||    
T  9212296 caccattaagcctattcaatattggaaaatatttggtttgaatttatctcataaaattgtttttttttcaaatctcgattttctaatagcatctttgttt 9212197  T
Q  213 ccaaattcttcatcaattgtgtttagcctcaatagcaaaaatatgaggggtttcttcaacccaaacaaaatcaatagaagacataatagcaaattttgct 312  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9212196 ccaaattct-catcaattgtttttagcctcaatagcaaaagtatgaggggtttcttcaacccaaacaaaatcaataaaagacataatagcaaattttgct 9212098  T
Q  313 atgaagacgacagcttgattggcaacatcgcaaatatgaaatatgagagaaaaaatctcaaagtattgaaatttgatgggagtctttgcaat-------- 404  Q
    | |||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||            
T  9212097 aagaagacgacagcttgattggcaacatggcaaatatga-------gagaaaaaatctcaaagtattgaaatttgatgggagtctttgcaatcttcagct 9212005  T
Q  405 --tgctcctaaaaataaagcttgagaataaatgagtctgatactactttaatcttgaggaacaacaagtacttgcaagctctatccctttcaacactagc 502  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9212004 cttgctcctaaaaataaagcttgagaataaatgagtctgatactactttaatcttgaggaacaacaagtacttgcaagctccatccctttcaacactagc 9211905  T
Q  503 atgccatctgccacatctgatactggtaatagcagcatacacgagcaacctgcagcgataactactccccctgcgtcgctgcggtcagcccccatttacc 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9211904 atgccatctgccacatctgatactggtaatagcagcatacacgagcaacctgcagcgataactactccccctgcgtcgctgcggtcagctcccatttacc 9211805  T
Q  603 atccttattaggccctgctggatccaccttaagtttgaataatcacttgtgggtggagtcttagacaaccagcacccaagtccatctactcatgaccttt 702  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211804 atccttattaggccctgctgcatccaccttaagtttgaataatcacttgtgggtggagtcttagacaaccagcacccaagtccatctactcatgaccttt 9211705  T
Q  703 gttttggatgtgctttttatataaagattatgacataactttgctgatattaatcaaaatatagacctgttgttgagtgcaacttggatagtattatcta 802  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9211704 gttttggatgtgctttttatataaagattatgacataactttgccgatattaatcaaaatatagacctgttgttgagtgcaacttggatagtattatcta 9211605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 237 - 404
Target Start/End: Complemental strand, 35970130 - 35969972
Alignment:
Q  237 agcctcaatagcaaaaatatgaggggtttcttcaacccaaacaaaatcaatagaagacataatagcaaatttt-gctatgaagacgacagcttgattggc 335  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| || |||||||| ||    
T  35970130 agcctcaatagcataaataagacgggtttcttcaacccaaacaaaatcaaaagaagacataatagcaaattttggctaagaagacaacggcttgattcgc 35970031  T
Q  336 aacatcgcaaatatgaaatatgagagaaaaaatctcaaagtattgaaatttgatgggagtctttgcaat 404  Q
    ||||| |||||||||||         |||||||||| |||||||||||||| |||||||||||||||||    
T  35970030 aacatggcaaatatgaa---------aaaaaatctc-aagtattgaaatttcatgggagtctttgcaat 35969972  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 35970335 - 35970225
Alignment:
Q  18 ttaggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaa-tttagtttaaatgttaattttcaaggctgca 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||  |||  ||| ||| |||||    
T  35970335 ttaggcttgaggcaactcaagccttcgagaatttctggaaggactccttttggggtaaagtcctacaattttagttcaaacattacattttaagcctgca 35970236  T
Q  117 ccattaagcct 127  Q
    |||||||||||    
T  35970235 ccattaagcct 35970225  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 9365141 - 9365211
Alignment:
Q  18 ttaggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaattt 88  Q
    |||||||| ||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  9365141 ttaggcttagggtaacttaagcctttgagaatttctggaaggactccttttggggtaaagtcctacaattt 9365211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 12558818 - 12558876
Alignment:
Q  30 caactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaattt 88  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  12558818 caactcaagcctttgagaattcctggaaggattccctttggggtaaagtcctacaattt 12558876  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 9371492 - 9371561
Alignment:
Q  19 taggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaattt 88  Q
    ||||||| ||| | || ||||||| |||||||| |||||||||||||||||||||||| |||||||||||    
T  9371492 taggcttagggtagcttaagcctttgagaatttttggaaggactccctttggggtaaaatcctacaattt 9371561  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 9290844 - 9290790
Alignment:
Q  30 caactcaagccttcgagaatttctggaaggactcccttt--ggggtaaagtccta 82  Q
    |||||| || |||||||||||||||||||||||||||||  ||||||||||||||    
T  9290844 caactctagtcttcgagaatttctggaaggactcccttttaggggtaaagtccta 9290790  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 9333217 - 9333276
Alignment:
Q  18 ttaggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcc 80  Q
    |||||||||| ||||||   |||||||||||||| ||||||||||||||||  ||||||||||    
T  9333217 ttaggcttggtgcaact---gccttcgagaatttttggaaggactcccttttaggtaaagtcc 9333276  T

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Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 24694848 - 24694973
Alignment:
Q  23 cttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctacaat-ttagtttaaatgttaattttcaaggctgcaccatt 121  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||  |||||||| |||||||  | |||    
T  24694848 cttggggcaactcaagcctttgagaatttctgaaaggactccctttgaggtaaagtcctacaatcttagtttaaacattaatttttaaggctgtgctatt 24694947  T
Q  122 aagcctattcaatattggaaaatatt 147  Q
    ||||||||||| | ||||||||||||    
T  24694948 aagcctattcatttttggaaaatatt 24694973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 424 - 534
Target Start/End: Original strand, 24695355 - 24695466
Alignment:
Q  424 tgagaataaatgagtctgatactactttaatcttgaggaacaacaagtactt-gcaagctctatccctttcaacactagcatgccatctgccacatctga 522  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | ||| | ||||||||||||||| |||||| |||||||||||||||||| ||     
T  24695355 tgagaataaatgagtctgatactactttaagcttgaggaacaacaaatccttcgaaagctctatcccttttaacactggcatgccatctgccacatttgt 24695454  T
Q  523 tactggtaatag 534  Q
    ||||||| ||||    
T  24695455 tactggtcatag 24695466  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 24695138 - 24695293
Alignment:
Q  237 agcctcaatagcaaaaatat--gaggggtttcttcaacccaaacaaaatcaatagaagacataatagcaaattttgctatgaagacgacagcttgattgg 334  Q
    ||||||||||||| ||||||  |||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |||   ||||| |  |||||||| |    
T  24695138 agcctcaatagcataaatatatgaggagtttcttcaacccaaacaaaatcaaaagaagacataacagcaaatttagct---aagacaatggcttgattcg 24695234  T
Q  335 caacatcgcaaatatgaaatatgagagaaaaaatctcaaagtattgaaatttgatgggagtcttt 399  Q
    |||||| |||||| ||||      || ||||||||| |||| ||||||||| |||||||||||||    
T  24695235 caacatggcaaatctgaa-----ggaaaaaaaatct-aaagaattgaaattagatgggagtcttt 24695293  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 31857592 - 31857545
Alignment:
Q  41 ttcgagaatttctggaaggactccctttggggtaaagtcctacaattt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31857592 ttcgagaatttctggaaggactccctttggggtaaagtcctacaattt 31857545  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 44916559 - 44916500
Alignment:
Q  38 gccttcgagaatttctggaaggactccc-tttggggtaaagtcctacaatttagtttaaa 96  Q
    ||||| |||||||||||||||| ||||| ||| |||||||| |||||||| |||||||||    
T  44916559 gcctttgagaatttctggaagggctccctttttgggtaaagccctacaatatagtttaaa 44916500  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 6600881 - 6600816
Alignment:
Q  18 ttaggcttggggcaactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctac 83  Q
    |||||||| ||| |||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  6600881 ttaggcttagggaaacttaagcctttgagaatttctggaaggactcccttaggggtaaagttctac 6600816  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 40770930 - 40770879
Alignment:
Q  38 gccttcgagaatttctggaaggactccctttggggtaaagtcctacaattta 89  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  40770930 gccttcgagaatttctggaagggctccccttggggtaaagccctacaattta 40770879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 40765065 - 40765016
Alignment:
Q  38 gccttcgagaatttctggaaggactccctttggggtaaagtcctacaatt 87  Q
    |||||||||||||||||||||| |||||   ||||||||| |||||||||    
T  40765065 gccttcgagaatttctggaagggctccccacggggtaaagccctacaatt 40765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 48611336 - 48611282
Alignment:
Q  30 caactcaagccttcgagaatttctggaaggactccctttggggtaaagtcctaca 84  Q
    ||||||||| ||| ||||||| |||||||||||||||||   |||||||||||||    
T  48611336 caactcaagtctttgagaattactggaaggactccctttaaagtaaagtcctaca 48611282  T

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