View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_low_10 (Length: 329)

Name: NF14239_low_10
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_low_10
NF14239_low_10
[»] chr8 (12 HSPs)
chr8 (58-314)||(7055434-7055696)
chr8 (254-316)||(7388456-7388518)
chr8 (261-315)||(38402259-38402313)
chr8 (261-311)||(5683762-5683812)
chr8 (261-311)||(16449133-16449183)
chr8 (261-311)||(34472305-34472355)
chr8 (249-311)||(42035332-42035394)
chr8 (250-303)||(10083160-10083213)
chr8 (266-311)||(10573114-10573159)
chr8 (270-311)||(39709202-39709243)
chr8 (254-310)||(8971525-8971581)
chr8 (279-311)||(24296880-24296912)
[»] chr5 (15 HSPs)
chr5 (250-315)||(10241722-10241787)
chr5 (261-311)||(2362977-2363027)
chr5 (261-311)||(19891438-19891488)
chr5 (266-315)||(10758812-10758861)
chr5 (261-316)||(6558809-6558864)
chr5 (248-311)||(35241391-35241454)
chr5 (261-311)||(546810-546860)
chr5 (261-311)||(33736026-33736076)
chr5 (254-316)||(35099260-35099322)
chr5 (261-302)||(1269188-1269229)
chr5 (261-302)||(17064879-17064920)
chr5 (279-316)||(35112969-35113006)
chr5 (259-311)||(16280252-16280304)
chr5 (279-311)||(26065449-26065481)
chr5 (247-311)||(26912827-26912891)
[»] chr7 (12 HSPs)
chr7 (254-311)||(40200121-40200178)
chr7 (262-313)||(4232352-4232403)
chr7 (254-316)||(27704306-27704368)
chr7 (250-311)||(9712210-9712271)
chr7 (262-315)||(48674570-48674623)
chr7 (259-315)||(11654174-11654230)
chr7 (261-315)||(23817196-23817250)
chr7 (261-311)||(47463939-47463989)
chr7 (254-303)||(21762912-21762961)
chr7 (261-310)||(28805308-28805357)
chr7 (261-310)||(37240085-37240134)
chr7 (280-316)||(12428217-12428253)
[»] chr2 (9 HSPs)
chr2 (250-303)||(17601076-17601129)
chr2 (261-311)||(35798038-35798088)
chr2 (254-310)||(36089138-36089194)
chr2 (261-311)||(7379612-7379662)
chr2 (266-316)||(11946048-11946098)
chr2 (261-311)||(15764938-15764988)
chr2 (249-311)||(17487700-17487762)
chr2 (246-311)||(40363083-40363148)
chr2 (279-311)||(2950374-2950406)
[»] chr4 (12 HSPs)
chr4 (250-310)||(8282339-8282399)
chr4 (262-316)||(9477443-9477497)
chr4 (250-311)||(13578477-13578538)
chr4 (262-315)||(37310036-37310089)
chr4 (249-300)||(5179905-5179956)
chr4 (248-303)||(10402436-10402491)
chr4 (264-311)||(47890706-47890753)
chr4 (254-316)||(3157224-3157286)
chr4 (266-315)||(30057235-30057284)
chr4 (271-311)||(481557-481597)
chr4 (280-316)||(52757285-52757321)
chr4 (259-303)||(56479246-56479290)
[»] chr3 (10 HSPs)
chr3 (254-303)||(25638409-25638458)
chr3 (254-311)||(29098693-29098750)
chr3 (259-311)||(4200597-4200649)
chr3 (279-311)||(29062513-29062545)
chr3 (250-300)||(25833820-25833870)
chr3 (261-311)||(29373461-29373511)
chr3 (266-311)||(15491866-15491911)
chr3 (278-315)||(23954869-23954906)
chr3 (254-310)||(2007096-2007152)
chr3 (261-301)||(46176824-46176864)
[»] chr1 (10 HSPs)
chr1 (250-311)||(19011352-19011413)
chr1 (254-311)||(2556557-2556614)
chr1 (278-315)||(11065145-11065182)
chr1 (261-302)||(27178729-27178770)
chr1 (254-311)||(28564357-28564414)
chr1 (254-299)||(35283502-35283547)
chr1 (262-311)||(40634210-40634259)
chr1 (279-315)||(8415755-8415791)
chr1 (279-315)||(32556937-32556973)
chr1 (259-311)||(39922109-39922161)
[»] scaffold0460 (1 HSPs)
scaffold0460 (261-311)||(13215-13265)
[»] chr6 (3 HSPs)
chr6 (261-307)||(27094823-27094869)
chr6 (279-316)||(5944452-5944489)
chr6 (254-311)||(6210055-6210112)
[»] scaffold0003 (1 HSPs)
scaffold0003 (246-303)||(315642-315699)
[»] scaffold0036 (1 HSPs)
scaffold0036 (279-311)||(39672-39704)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 58 - 314
Target Start/End: Complemental strand, 7055696 - 7055434
Alignment:
Q  58 tgggttaatagatagtagtggacgaatatgcgagcatgggcaaattctctctct--------atttgaactaaatgcttgtcaattaaggctgcttttca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||    
T  7055696 tgggttaatagatagtagtggacgaatatgcgagcatgggcaaattctctctctctctctctatttgaactaaatgcttg-caattaaggctgcttttca 7055598  T
Q  150 tatcctacatgagcgcgagttcaactcttcttaccgatttgataaatttttggtggataatataatcttttaacacctgaaccttaagtaaaacaagaca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||||| ||||||    
T  7055597 tatcctacatgagcgcgagttcaactcttcttaccgatttgataactttttggtggataatataatcttttaacatttgaaccttaactaaaataagaca 7055498  T
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaa 314  Q
    || ||||| ||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||    
T  7055497 at-tccgtgaacttaactcagttggtaaagatattgtatatcatatgtaggggttgaggttcaaa 7055434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 7388456 - 7388518
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||| ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||    
T  7388456 ccgtgaacttaactcagttggtagggatattgcatattatatgcaggggttggggttcaaact 7388518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 38402259 - 38402313
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    ||||||||| ||||||  |||||||||||| || |||||||||||||||||||||    
T  38402259 cttaactcagttggtagggatattgcatattatttgcaggggttggggttcaaac 38402313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 5683762 - 5683812
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| |||||||||||   ||||||||||| ||||||||||||||||||||    
T  5683762 cttagctcaattggtaggaatattgcatattatatgcaggggttggggttc 5683812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 16449133 - 16449183
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| |||| ||||||  |||||||||||| ||||||||||||||||||||    
T  16449133 cttagctcagttggtagggatattgcatattatatgcaggggttggggttc 16449183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 34472305 - 34472355
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||  |||||||||||| ||||||||| ||||||||||    
T  34472305 cttaactcagttggtagggatattgcatattatatgcaggagttggggttc 34472355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 42035332 - 42035394
Alignment:
Q  249 aatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| ||||||  |||||||| ||| ||||||||||| |||| ||||||||||| ||||||||    
T  42035332 aatccccgtaagtttaactcagttgataaagatattgtatattatatgcaggggctggggttc 42035394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 10083160 - 10083213
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    |||||||| | ||||||||| ||||||  |||||||||||| ||||||||||||    
T  10083160 atctccgtgagcttaactcagttggtagggatattgcatattatatgcaggggt 10083213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 10573114 - 10573159
Alignment:
Q  266 ctcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| ||||||  |||||||||||| ||||||||||||||||||||    
T  10573114 ctcagttggtagggatattgcatattatatgcaggggttggggttc 10573159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 39709243 - 39709202
Alignment:
Q  270 attggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||| ||||||||||||||||||||||  ||||||||||    
T  39709243 attggtagagatattgcatatcatatgcagcagttggggttc 39709202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 8971581 - 8971525
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggtt 310  Q
    |||| |||||| |||| ||||||| |||||| ||||| |||||||||||| ||||||    
T  8971581 ccgttaacttacctcatttggtaaggatattacatattatatgcaggggtcggggtt 8971525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 24296912 - 24296880
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||||||| ||||||||||||||||||||    
T  24296912 gatattgcatattatatgcaggggttggggttc 24296880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 10241722 - 10241787
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||||||| | ||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||    
T  10241722 atctccgtgagcttaactcagttggtagggatattgcatattatatgcaggggttggggttcaaac 10241787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 2362977 - 2363027
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||  |||||||||||| ||||||||||||||||||||    
T  2362977 cttaactcagttggtagggatattgcatattatatgcaggggttggggttc 2363027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 19891488 - 19891438
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||| |||||||||| | ||||||||||||||||||||    
T  19891488 cttaactcagttggtaaggatattgcattttatatgcaggggttggggttc 19891438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 10758861 - 10758812
Alignment:
Q  266 ctcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||| ||||    
T  10758861 ctcaattggtaaagatattgcatattatatgtaggggctggggtttaaac 10758812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 6558809 - 6558864
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||| |||||||||||  |||||||||||| |||||||||||| ||||||| ||||    
T  6558809 cttagctcaattggtagggatattgcatattatatgcaggggtcggggttcgaact 6558864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 35241391 - 35241454
Alignment:
Q  248 caatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||||| | ||||  ||| |||||| ||||||||||||| |||||||||||| |||||||    
T  35241391 caatctccgtgagcttagttcagttggtagagatattgcatattatatgcaggggtcggggttc 35241454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 546810 - 546860
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||  |||||||||||| |||||||||||| |||||||    
T  546810 cttaactcagttggtagggatattgcatattatatgcaggggtcggggttc 546860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 33736076 - 33736026
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||  |||||||||||| |||||||||||| |||||||    
T  33736076 cttaactcagttggtagggatattgcatattatatgcaggggtcggggttc 33736026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 35099322 - 35099260
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||| ||||||||||||||| || ||||||||| ||| |||||||||||| | ||||| ||||    
T  35099322 ccgtgaacttaactcaattgatacagatattgcgtattatatgcaggggtcgaggttcgaact 35099260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 1269229 - 1269188
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcagggg 302  Q
    |||| ||||||||||| ||||||||||||| |||||||||||    
T  1269229 cttagctcaattggtagagatattgcatattatatgcagggg 1269188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 17064920 - 17064879
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcagggg 302  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  17064920 cttaactcaattggtagggatattgcatattatatgcagggg 17064879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 35113006 - 35112969
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  35113006 gatattgcatattatatgcaggggttggggttcgaact 35112969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 16280252 - 16280304
Alignment:
Q  259 aacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| | |||||| ||||||||||| | ||||| ||||||||||||||    
T  16280252 aacttaactgagttggtagagatattgcattttatatgtaggggttggggttc 16280304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 26065481 - 26065449
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||||||| ||||||||||||||||||||    
T  26065481 gatattgcatattatatgcaggggttggggttc 26065449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 26912827 - 26912891
Alignment:
Q  247 acaatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| |||| | ||||||||||||||||  |||||||||||| ||||| |||||  |||||||    
T  26912827 acaatccccgtgagcttaactcaattggtagggatattgcatattatatgtaggggccggggttc 26912891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 40200178 - 40200121
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| ||||||||| |||||| | ||||||||||| ||||||||||||||||||||    
T  40200178 ccgtaagcttaactcagttggtagaaatattgcatattatatgcaggggttggggttc 40200121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 4232403 - 4232352
Alignment:
Q  262 ttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaa 313  Q
    ||||||||||||||| ||||||||||||| |||||||| ||| |||||||||    
T  4232403 ttaactcaattggtagagatattgcatattatatgcagaggtaggggttcaa 4232352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 27704368 - 27704306
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||| ||||||||||| ||||||   ||||||||||| |||||||||||||||||||| ||||    
T  27704368 ccgtgaacttaactcagttggtaggaatattgcatattatatgcaggggttggggttcgaact 27704306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 9712271 - 9712210
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||| | ||||||||| ||||||  |||||||||||| |||||||||||| |||||||    
T  9712271 atctccgtgagcttaactcagttggtagggatattgcatattatatgcaggggtcggggttc 9712210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 48674623 - 48674570
Alignment:
Q  262 ttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||||||| ||| ||| |||||||||| | ||||||||||||||||||||||||    
T  48674623 ttaactcagttgataaggatattgcattttatatgcaggggttggggttcaaac 48674570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 11654174 - 11654230
Alignment:
Q  259 aacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||||||||||||||||| ||||||| ||||| ||||||||| |||| | |||||||    
T  11654174 aacttaactcaattggtagagatatttcatattatatgcaggagttgagattcaaac 11654230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 23817196 - 23817250
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    ||||||||||||||||  |||||||||| | ||||| |||||| |||||||||||    
T  23817196 cttaactcaattggtagggatattgcatgttatatgtaggggtcggggttcaaac 23817250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 47463939 - 47463989
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| |||||| | ||||||||| | ||||||||||||||||||||    
T  47463939 cttaactcagttggtagaaatattgcatgttatatgcaggggttggggttc 47463989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 21762961 - 21762912
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    |||| |||||| |||| ||||||| |||||||||||| ||||||||||||    
T  21762961 ccgtgaacttatctcagttggtaaggatattgcatattatatgcaggggt 21762912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 28805308 - 28805357
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggtt 310  Q
    |||| |||| ||||||  ||||||||||||||||||||||||| ||||||    
T  28805308 cttagctcagttggtagggatattgcatatcatatgcaggggtcggggtt 28805357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 37240134 - 37240085
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggtt 310  Q
    ||||||||| |||||||||| ||||||||  |||| ||||||||||||||    
T  37240134 cttaactcagttggtaaagacattgcataatatatacaggggttggggtt 37240085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 12428217 - 12428253
Alignment:
Q  280 atattgcatatcatatgcaggggttggggttcaaact 316  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  12428217 atattgcatattatatgcaggggttggggttcgaact 12428253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 17601076 - 17601129
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    |||||||| ||||||||||| ||||||  |||||||||||||||||||||||||    
T  17601076 atctccgtgaacttaactcagttggtagggatattgcatatcatatgcaggggt 17601129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 35798088 - 35798038
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||| || ||||||||||||| ||||||||||||||||||||    
T  35798088 cttaactcagttgttagagatattgcatattatatgcaggggttggggttc 35798038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 36089194 - 36089138
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggtt 310  Q
    |||||||||||||||| |||| |  |||||||||||| |||| ||||||||||||||    
T  36089194 ccgtaaacttaactcagttggcagggatattgcatattatatacaggggttggggtt 36089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 7379662 - 7379612
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||| |||||||||||| |||||||| ||| |||||||    
T  7379662 cttaactcagttggtaaggatattgcatattatatgcagaggtcggggttc 7379612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 11946098 - 11946048
Alignment:
Q  266 ctcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||||||||||| |||||| ||||| |||||||||||||  ||||||||||    
T  11946098 ctcaattggtaacgatattacatattatatgcaggggttaaggttcaaact 11946048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 15764938 - 15764988
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| |||| ||||||  |||||||||||| ||||||||||||||||||||    
T  15764938 cttagctcagttggtagggatattgcatattatatgcaggggttggggttc 15764988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 17487700 - 17487762
Alignment:
Q  249 aatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| |||||| |||| ||||||  |||||||||||| |||||||| || ||||||||    
T  17487700 aatctccgtgaacttagctcagttggtagggatattgcatattatatgcagtggctggggttc 17487762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 40363148 - 40363083
Alignment:
Q  246 gacaatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| ||||| | ||||||||| ||||||  |||||||||||| ||||| |||||| |||||||    
T  40363148 gacaatatccgtgagcttaactcagttggtagggatattgcatattatatgtaggggtcggggttc 40363083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 2950406 - 2950374
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||||||| ||||||||||||||||||||    
T  2950406 gatattgcatattatatgcaggggttggggttc 2950374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 8282339 - 8282399
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggtt 310  Q
    |||||||| | ||||||||||||| ||| |||||||||||| |||||||||||||| ||||    
T  8282339 atctccgtgagcttaactcaattgataaggatattgcatattatatgcaggggttgaggtt 8282399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 9477497 - 9477443
Alignment:
Q  262 ttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||||||||||||| |||||||||||||| |||||||||| | | ||||||||||    
T  9477497 ttaactcaattggttaagatattgcatattatatgcagggatcgtggttcaaact 9477443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 13578538 - 13578477
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||| | ||||||||| ||||||  |||||||||||| |||||||||||| |||||||    
T  13578538 atctccgtgagcttaactcagttggtagggatattgcatattatatgcaggggtcggggttc 13578477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 37310036 - 37310089
Alignment:
Q  262 ttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||||||| ||||||  |||||||||||| ||||| ||||||||||||||||||    
T  37310036 ttaactcagttggtatggatattgcatattatatgtaggggttggggttcaaac 37310089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 5179956 - 5179905
Alignment:
Q  249 aatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcagg 300  Q
    |||| |||| ||||||||||| ||||||| |||||||||||| |||||||||    
T  5179956 aatccccgtgaacttaactcagttggtaaggatattgcatattatatgcagg 5179905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 10402436 - 10402491
Alignment:
Q  248 caatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    ||||| |||| | ||||||||| |||||| ||||||||||||| ||||||||||||    
T  10402436 caatccccgtgagcttaactcagttggtagagatattgcatattatatgcaggggt 10402491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 47890706 - 47890753
Alignment:
Q  264 aactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| |||||| ||||||||||||| |||||||||||| |||||||    
T  47890706 aactcagttggtagagatattgcatattatatgcaggggtcggggttc 47890753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 3157286 - 3157224
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||| |||||| |||| ||||||   ||||||||||| |||||||||||| ||||||||||||    
T  3157286 ccgtgaacttagctcagttggtaggaatattgcatattatatgcaggggtcggggttcaaact 3157224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 30057235 - 30057284
Alignment:
Q  266 ctcaattggtaaagatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||| ||||||  |||||||||||| |||||||||||| |||||||||||    
T  30057235 ctcagttggtagggatattgcatattatatgcaggggtcggggttcaaac 30057284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 481597 - 481557
Alignment:
Q  271 ttggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| ||||||||||||| ||||| ||||||||||||||    
T  481597 ttggtagagatattgcatattatatgtaggggttggggttc 481557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 52757321 - 52757285
Alignment:
Q  280 atattgcatatcatatgcaggggttggggttcaaact 316  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  52757321 atattgcatattatatgcaggggttggggttcgaact 52757285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 56479290 - 56479246
Alignment:
Q  259 aacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    ||||||||||| ||||||  |||||||||||| ||||||||||||    
T  56479290 aacttaactcagttggtagggatattgcatattatatgcaggggt 56479246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 25638458 - 25638409
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    |||| |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  25638458 ccgtgaacttaactcaattggtagagatattgcatattatatgtaggggt 25638409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 29098693 - 29098750
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| ||||||||||| |||||| |||||||| |||| |||||||||||| |||||||    
T  29098693 ccgtgaacttaactcagttggtagagatattgtatattatatgcaggggtcggggttc 29098750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 4200649 - 4200597
Alignment:
Q  259 aacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||||| ||||||  |||||||||||| |||||||||||| |||||||    
T  4200649 aacttaactcagttggtagggatattgcatattatatgcaggggtcggggttc 4200597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 29062545 - 29062513
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  29062545 gatattgcatatcatatgcaggggttggggttc 29062513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 25833820 - 25833870
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcagg 300  Q
    |||||||| | |||| |||| |||||||||||||||||||| |||||||||    
T  25833820 atctccgttagcttagctcagttggtaaagatattgcatattatatgcagg 25833870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 29373511 - 29373461
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    ||||||||| ||||||| |||||||||||| |||||||||||  |||||||    
T  29373511 cttaactcagttggtaaggatattgcatattatatgcaggggccggggttc 29373461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 15491866 - 15491911
Alignment:
Q  266 ctcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| |||||| | ||||||||||| ||||||||||||||||||||    
T  15491866 ctcagttggtagaaatattgcatattatatgcaggggttggggttc 15491911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 23954869 - 23954906
Alignment:
Q  278 agatattgcatatcatatgcaggggttggggttcaaac 315  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  23954869 agatattgcatattatatgcaggggttgaggttcaaac 23954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 2007152 - 2007096
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggtt 310  Q
    |||| ||||||||||| |||||| | ||||||||||| ||||||||| || ||||||    
T  2007152 ccgtgaacttaactcagttggtagaaatattgcatattatatgcaggagtcggggtt 2007096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 46176864 - 46176824
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggg 301  Q
    ||||||||||||||||  |||||||||||| ||||||||||    
T  46176864 cttaactcaattggtatggatattgcatattatatgcaggg 46176824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 19011352 - 19011413
Alignment:
Q  250 atctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||| | |||| |||||||||||  |||||||||||| ||||||||||| ||||||||    
T  19011352 atctccgtgagcttagctcaattggtagggatattgcatattatatgcaggggctggggttc 19011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 2556557 - 2556614
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| |||| |||| ||||||  |||||||||||| ||||||||||| ||||||||    
T  2556557 ccgtaagcttagctcagttggtagggatattgcatattatatgcaggggctggggttc 2556614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 11065145 - 11065182
Alignment:
Q  278 agatattgcatatcatatgcaggggttggggttcaaac 315  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  11065145 agatattgcatattatatgcaggggtcggggttcaaac 11065182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 27178770 - 27178729
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcagggg 302  Q
    ||||||||||||||||| ||||||| |||| |||||||||||    
T  27178770 cttaactcaattggtaaggatattgtatattatatgcagggg 27178729  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 28564414 - 28564357
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| ||||||||| || |||  ||||||||| || ||||||||||||||||||||    
T  28564414 ccgtaagcttaactcagttagtagggatattgcagattatatgcaggggttggggttc 28564357  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 35283502 - 35283547
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcag 299  Q
    |||| ||||||||||| |||||||||||||| ||||| ||||||||    
T  35283502 ccgtgaacttaactcagttggtaaagatattacatattatatgcag 35283547  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 40634210 - 40634259
Alignment:
Q  262 ttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||| ||||||  |||||||||||| ||||||||||| ||||||||    
T  40634210 ttaactcagttggtagggatattgcatattatatgcaggggatggggttc 40634259  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 8415755 - 8415791
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||||||||||| |||||||||||| |||||||||||    
T  8415755 gatattgcatattatatgcaggggtcggggttcaaac 8415791  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 32556973 - 32556937
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttcaaac 315  Q
    |||||||||||| |||||||| |||||||||||||||    
T  32556973 gatattgcatattatatgcagaggttggggttcaaac 32556937  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 39922161 - 39922109
Alignment:
Q  259 aacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||||| |||||||| || ||||||| ||||| ||||||||||||| ||||||    
T  39922161 aacttatctcaattgttagagatattacatattatatgcaggggttagggttc 39922109  T

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Target: scaffold0460 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 13265 - 13215
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| |||| ||||||  |||||||||||| ||||||||||||||||||||    
T  13265 cttagctcagttggtagggatattgcatattatatgcaggggttggggttc 13215  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 27094869 - 27094823
Alignment:
Q  261 cttaactcaattggtaaagatattgcatatcatatgcaggggttggg 307  Q
    ||||||||| ||||||  |||||||||||| ||||||||||||||||    
T  27094869 cttaactcagttggtagggatattgcatattatatgcaggggttggg 27094823  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 5944452 - 5944489
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttcaaact 316  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  5944452 gatattgcatattatatgcaggggtcggggttcaaact 5944489  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 6210055 - 6210112
Alignment:
Q  254 ccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggttggggttc 311  Q
    |||| |||||| |||| ||||||  |||||||||||| ||||||||||| ||||||||    
T  6210055 ccgtgaacttagctcagttggtagggatattgcatattatatgcaggggctggggttc 6210112  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 315642 - 315699
Alignment:
Q  246 gacaatctccgtaaacttaactcaattggtaaagatattgcatatcatatgcaggggt 303  Q
    ||||||| |||| |||||| |||| ||||||| |||||||||| | ||||||||||||    
T  315642 gacaatccccgtgaacttagctcagttggtaaggatattgcattttatatgcaggggt 315699  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 39672 - 39704
Alignment:
Q  279 gatattgcatatcatatgcaggggttggggttc 311  Q
    |||||||||||| ||||||||||||||||||||    
T  39672 gatattgcatattatatgcaggggttggggttc 39704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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