View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_low_3 (Length: 596)
Name: NF14239_low_3
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 6 - 580
Target Start/End: Complemental strand, 2701433 - 2700850
Alignment:
| Q |
6 |
ttaaaatgctagt-aaaaagaatcgatttcctaaaatttactggtagcttactatannnnnnnnnngaggtaatagcttgctgataggttgctatattta |
104 |
Q |
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| T |
2701433 |
ttaaaatgctagttaaaaagaatcgatttcttaaaacttactgatagcttactatattttttttt-gaggtaatagcttgctgatagcttactatattta |
2701335 |
T |
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| Q |
105 |
attagtacgaaccaattagtaccaaaactatataacatattgattttttctcaactcgtgtg-----aatccatatccatagtaacgcgtattgtgaatt |
199 |
Q |
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| T |
2701334 |
attagtacgaaccaactagtaccaaaactatataacatattaattttatctcaaatcgtgtaccgcaaatccatatccatagtaacgtgtattgcgaatt |
2701235 |
T |
|
| Q |
200 |
atgtgactatgtttcgatcactatccatactta----tatctatccaacataaactaacttatctcatcaaaagagtcaatctataaaaagaaaaacgaa |
295 |
Q |
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||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2701234 |
atgtgactatgtttcgatcaccatccatacttacttatacctatccaacataaactaacttatctcatcaaaagagccaatctataaaaagaaaaacgaa |
2701135 |
T |
|
| Q |
296 |
gtgcactaaagattattattattatttctgaataagagataagcattgtccatagtcttggtaaactaagaagtagcaaacaacaaaactctgcctctat |
395 |
Q |
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| T |
2701134 |
gtgcactaaagattattattattatttctgaataagagataaacattgtccatagtcttggtaaactaagaagtagcaaacaacaaaactctacctctat |
2701035 |
T |
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| Q |
396 |
ctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcccttaatagcagaacatgaaggaag |
495 |
Q |
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| T |
2701034 |
ctttcttgaaactatcaatggaaggtgaaggtgataagtggcagcagtgtagtgaagatgttgctctgaatattcccttaatagcagagcatgaaggaag |
2700935 |
T |
|
| Q |
496 |
ccaaatttctggtaacagtcccagtaacaatgtcaccacatcattccttaaaacttgtttcaatggtctcaatgctttatcaggt |
580 |
Q |
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| T |
2700934 |
ccaaatttctggcaacaatcccagtaacaatgtcaccacatcattccttaaaacttgtttcaatggtctcaatgctttatcaggt |
2700850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 2701699 - 2701643
Alignment:
| Q |
5 |
tttaaaatgctagtaaaaagaatcgatttcct-aaaatttactggtagcttactata |
60 |
Q |
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| T |
2701699 |
tttaaaatgctagtaaaaataatcgatttcttaaaaatttaatgatagcttactata |
2701643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 395 - 580
Target Start/End: Complemental strand, 10843596 - 10843408
Alignment:
| Q |
395 |
tctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcccttaatagcagaacatgaaggaa |
494 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | |||||||| |||| | || ||||||||||||||| |
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| T |
10843596 |
tcttccttgaaaatatcaatggaaggagaaggtgataagtggcagaggtgtgatgaagatatctctctgaatgttcctcttttaacagaacatgaaggaa |
10843497 |
T |
|
| Q |
495 |
gccaaatttctggtaacagtcccagtaacaa---tgtcaccacatcattccttaaaacttgtttcaatggtctcaatgctttatcaggt |
580 |
Q |
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| T |
10843496 |
accaaatttctggtagcggtcccaacgacaatattcttaccacttctttccttaaaacttgtttcaatggtctcaatgctttaacaggt |
10843408 |
T |
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