View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14239_low_4 (Length: 588)

Name: NF14239_low_4
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14239_low_4
NF14239_low_4
[»] chr6 (14 HSPs)
chr6 (416-572)||(1898810-1898966)
chr6 (407-572)||(1904015-1904181)
chr6 (407-572)||(1908248-1908414)
chr6 (200-357)||(1899070-1899227)
chr6 (416-549)||(1888271-1888404)
chr6 (414-550)||(1914150-1914285)
chr6 (431-546)||(1893124-1893239)
chr6 (430-552)||(1880968-1881090)
chr6 (259-308)||(1904309-1904358)
chr6 (259-308)||(1908542-1908591)
chr6 (36-79)||(1904970-1905014)
chr6 (36-79)||(1909203-1909247)
chr6 (79-110)||(1899493-1899524)
chr6 (447-522)||(1919164-1919239)
[»] chr3 (1 HSPs)
chr3 (81-109)||(44240209-44240237)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 8e-81; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 416 - 572
Target Start/End: Complemental strand, 1898966 - 1898810
Alignment:
Q  416 aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtg 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1898966 aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtg 1898867  T
Q  516 gcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactg 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1898866 gcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactg 1898810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 1904181 - 1904015
Alignment:
Q  407 tttcaagcaaagaatcaaatgcaaaaa-ttgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataaca 505  Q
    ||||||||||||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  1904181 tttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataaca 1904082  T
Q  506 atttgaagtggcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactg 572  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||    
T  1904081 atttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaactg 1904015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 1908414 - 1908248
Alignment:
Q  407 tttcaagcaaagaatcaaatgcaaaaa-ttgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataaca 505  Q
    ||||||||||||||||||| ||||||| || || | || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  1908414 tttcaagcaaagaatcaaaagcaaaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataaca 1908315  T
Q  506 atttgaagtggcttgaatgaggttacatagactgccccctttaagcgaactgtccaagcacaaactg 572  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||    
T  1908314 atttgaagtggcttgaatgaggttacatagactgccccctttaaccgaacagaccaggcacaaactg 1908248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 1899227 - 1899070
Alignment:
Q  200 acggtttttgttaaaggtatttccagtttgattccaaaaagaatcagttcggnnnnnnngtaaaggtattttcagctcggtagaaaaccacataatcggt 299  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||    
T  1899227 acggtttttgttaaaggtatttcaagtttgattccaaaaagaatcagttcggtttttttgtaaaggtattttcagctcggttgaaaaccacataatcggt 1899128  T
Q  300 gcactaaacggtttggaacgaaccattaacagttctgttgagttttatcaaattgttg 357  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  1899127 gcactaaacggtttggaacgaaccattaacaattcagttgaattttatcgaattgttg 1899070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 416 - 549
Target Start/End: Complemental strand, 1888404 - 1888271
Alignment:
Q  416 aagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtg 515  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  ||| || |||||||||||||||| ||||    
T  1888404 aagaatccaattcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtg 1888305  T
Q  516 gcttgaatgaggttacatagactgccccctttaa 549  Q
    |||||||||| ||||||||||| || ||||||||    
T  1888304 gcttgaatgatgttacatagacagctccctttaa 1888271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 414 - 550
Target Start/End: Complemental strand, 1914285 - 1914150
Alignment:
Q  414 caaagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaag 513  Q
    ||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||||||||||| ||||| || || | | |||| ||||||||||| ||    
T  1914285 caaagaatcaaatgcaaaa-ttgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcag 1914187  T
Q  514 tggcttgaatgaggttacatagactgccccctttaag 550  Q
    |||||||||||||||||||||||| ||||||||||||    
T  1914186 tggcttgaatgaggttacatagacagccccctttaag 1914150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 431 - 546
Target Start/End: Complemental strand, 1893239 - 1893124
Alignment:
Q  431 aaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggtta 530  Q
    ||||| |||| || ||||||||||| ||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||||||||    
T  1893239 aaattaaattaaccataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtta 1893140  T
Q  531 catagactgccccctt 546  Q
    ||||||| ||||||||    
T  1893139 catagacagccccctt 1893124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 430 - 552
Target Start/End: Complemental strand, 1881090 - 1880968
Alignment:
Q  430 aaaattgaatttactataccttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggtt 529  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||| |||||| | ||| || ||||||  |||||||| |||||||||||||| |||    
T  1881090 aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt 1880991  T
Q  530 acatagactgccccctttaagcg 552  Q
    |||||||| || |||||||||||    
T  1880990 acatagacagctccctttaagcg 1880968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 1904358 - 1904309
Alignment:
Q  259 gtaaaggtattttcagctcggtagaaaaccacataatcggtgcactaaac 308  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1904358 gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac 1904309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 1908591 - 1908542
Alignment:
Q  259 gtaaaggtattttcagctcggtagaaaaccacataatcggtgcactaaac 308  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1908591 gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac 1908542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 1905014 - 1904970
Alignment:
Q  36 tatacacaaatgaacactttaacaatcatt-taatcagaaatgag 79  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  1905014 tatacacaaatgaacactttaacaatcattgaaatcagaaatgag 1904970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 1909247 - 1909203
Alignment:
Q  36 tatacacaaatgaacactttaacaatcatt-taatcagaaatgag 79  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  1909247 tatacacaaatgaacactttaacaatcattgaaatcagaaatgag 1909203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 1899524 - 1899493
Alignment:
Q  79 gacttatactagtagataaactcaaataagtt 110  Q
    ||||||||||||||||||||||||||||||||    
T  1899524 gacttatactagtagataaactcaaataagtt 1899493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 522
Target Start/End: Complemental strand, 1919239 - 1919164
Alignment:
Q  447 accttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaa 522  Q
    ||||||||| ||||||||||||||||||||||| || ||| |   || ||| ||||||||||  ||||||||||||    
T  1919239 accttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaa 1919164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 44240209 - 44240237
Alignment:
Q  81 cttatactagtagataaactcaaataagt 109  Q
    |||||||||||||||||||||||||||||    
T  44240209 cttatactagtagataaactcaaataagt 44240237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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