View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_low_5 (Length: 556)
Name: NF14239_low_5
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 28881554 - 28881011
Alignment:
| Q |
1 |
aagcttaggatcaacttcttgtgagtccaagcatgcaatgatggaggcagtgaaggtgaccattagagaggcagttgcgactaattctatcaaagctgcc |
100 |
Q |
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|||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28881554 |
aagcttaggatctagttcttgtgagtccaagcatgcaataatggaggcagtgaaggtgaccattagagaggcagttgccactaattctatcaaagctgcc |
28881455 |
T |
|
| Q |
101 |
ttccatgtctataagagaagnnnnnnngagtaggagagtctttaaacattacaaatttatattaaaagaccatattgcagtgtatannnnnnnnnatggt |
200 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28881454 |
ttccaagtctataagagaagaaaaaaagagtaggagagtctttaaacattacaaatttatattaaaagaccatattgcagtgtatatttttttttatggt |
28881355 |
T |
|
| Q |
201 |
gttcgggattaaaaa----actat--atatgttatgcattatccgcagaccttgcatatattgtagtgtatatatcataacatgcaaatttatatgcaca |
294 |
Q |
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|| ||||||| || ||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28881354 |
gtccgggattcgaactcggactttgcatatattatacattatccgcagaccttgcatatattgtagtgtatatatcataacatgcaaatttatatgcaca |
28881255 |
T |
|
| Q |
295 |
gccttgattaattttaaatatttattgacatgttttcaatgactattttataaaataaaaagagtgtataatgactgaaattcgtatttaattattacct |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28881254 |
gccttgattaattttaaatatttattgacatgttttcaatgactattttataaaataaaaagagtgtataatgactgaaattcgtatttaattattacct |
28881155 |
T |
|
| Q |
395 |
cagggctaaaaatctcatgtacgccaagagaagcctgaaacttcccttttaaaggggttttaggtcccaaacaaattttctcgcaagtttgaaatgacat |
494 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28881154 |
cagggctaaaaatttcatgcacgccaagagaagcctgaaacttcccttttaaaggggttttaggtcccaaacaaattttctcgcaagtttgaaatgacat |
28881055 |
T |
|
| Q |
495 |
agaaagattttcatcagctacacgtgagtttgttgaattcatgg |
538 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28881054 |
agaaagattttcatcagctacacgtgagtttgttgaattcatgg |
28881011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 28886559 - 28886440
Alignment:
| Q |
1 |
aagcttaggatcaacttcttgtgagtccaagcatgcaatgatggaggcagtgaaggtgaccattagagaggcagttgcgactaattctatcaaagctgcc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||| |||||||||||| ||||| |||| |||| |||||||||| |
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| T |
28886559 |
aagcttaggatcaacttcgtgtgagtccaagcatgcaataatggagctagtcaaggtgaacattagagaggctgttgccactagttctgtcaaagctgct |
28886460 |
T |
|
| Q |
101 |
ttccatgtctataagagaag |
120 |
Q |
| |
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||||||||||| |||||||| |
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| T |
28886459 |
ttccatgtctaaaagagaag |
28886440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 471
Target Start/End: Complemental strand, 28886008 - 28885890
Alignment:
| Q |
353 |
aaagagtgtataatgactgaaattcgtatttaattattacctcagggctaaaaatctcatgtacgccaagagaagcctgaaacttcccttttaaaggggt |
452 |
Q |
| |
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||||| |||||||| | ||| ||| || |||| | |||||||| ||||| |||||||||||| | |||| ||| | | ||||||||||||||||||| | |
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| T |
28886008 |
aaagaatgtataattattgacatttgtgtttagtcattacctctgggctgaaaatctcatgtgctccaatagaggtcccaaacttcccttttaaagggtt |
28885909 |
T |
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| Q |
453 |
tttaggtcccaaacaaatt |
471 |
Q |
| |
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||| || ||||||||||| |
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| T |
28885908 |
tttgggcgccaaacaaatt |
28885890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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