View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14239_low_6 (Length: 402)
Name: NF14239_low_6
Description: NF14239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14239_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 21 - 387
Target Start/End: Original strand, 33319914 - 33320280
Alignment:
| Q |
21 |
gttcgctcagcatatgtttcaatatggcctgaatttattcgactgtcagcaacaacccatgccccacctcggagttcacccatcattgggatgtatacaa |
120 |
Q |
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| T |
33319914 |
gttcgctcagcatatgtttcaatatggcctgaatttattcgactgtcagcaacaacccatgccccacctcggagttcacccatcattgggatgtatacaa |
33320013 |
T |
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| Q |
121 |
aaatgggttgcttgtatgttctaaggttctccacaatagttgaaccagcctgaagaattccttcgaaaaggtccctttgcccacccgaaaagcctctcca |
220 |
Q |
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| T |
33320014 |
aaatgggttgcttgtatgttctaaggttctccacaatagttgaaccagcctgaagaattccttcgaaaaggtccctttgcccacccgaaaagcctctcca |
33320113 |
T |
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| Q |
221 |
atttgcgagaatgaaaagcgggagctcttctctattgaaatccaatatcgcttgggcagttttggtcgcagaatcaggaaaccatacttggccggcttga |
320 |
Q |
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| T |
33320114 |
atttgcgagaatgaaaagcgggagctcttctctattgaaatccaatatcgcttgggcagttttggtcgcagaatcaggaaaccacacttggccggcttga |
33320213 |
T |
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| Q |
321 |
ggaacaaccctctcgtgagaatcaagctgacctggatcagcaggtattatttgcattactgtctgtg |
387 |
Q |
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| T |
33320214 |
ggaacaaccctctcatgagaatcaagctgacatggatcagcaggtattatttgcattactgtctgtg |
33320280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 37 - 382
Target Start/End: Original strand, 33345052 - 33345397
Alignment:
| Q |
37 |
tttcaatatggcctgaatttattcgactgtcagcaacaacccatgccccacctcggagttcacccatcattgggatgtatacaaaaatgggttgcttgta |
136 |
Q |
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| T |
33345052 |
tttcaatgtggtctgagttgattcggctgtcgacaacaacccaagccccgcctcggagttcacccatcattgggatgtatacaaatatgggctgcttgta |
33345151 |
T |
|
| Q |
137 |
tgttctaaggttctccacaatagttgaaccagcctgaagaattccttcgaaaaggtccctttgcccacccgaaaagcctctccaatttgcgagaatgaaa |
236 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||||||| |
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| T |
33345152 |
tgtcctaaggttctccacaatagtcgaaccagcctgaagaattccttcaaaaaggtccctttgtccacctgaaaagcctctccagtttgcgataatgaaa |
33345251 |
T |
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| Q |
237 |
agcgggagctcttctctattgaaatccaatatcgcttgggcagttttggtcgcagaatcaggaaaccatacttggccggcttgaggaacaaccctctcgt |
336 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
33345252 |
agtgggagctcttctctgttgaaatccaatatcgcttgggccgtcttggtcgcagaatcaggaaaccacacttgcccagcttgaggaacaaccctctcgt |
33345351 |
T |
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| Q |
337 |
gagaatcaagctgacctggatcagcaggtattatttgcattactgt |
382 |
Q |
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|||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
33345352 |
gagaatcaagttggcctggatcagcaggtattatttgcataactgt |
33345397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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