View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14240_high_5 (Length: 311)
Name: NF14240_high_5
Description: NF14240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14240_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 36 - 294
Target Start/End: Complemental strand, 34583050 - 34582794
Alignment:
| Q |
36 |
atactaagatagttgacacggttgatgttcatgctcgtgaattaattttcttacatcttagtatgatgacaaaatttgtacaaaaatattgatctgataa |
135 |
Q |
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| T |
34583050 |
atactaagatagttgacacggttgatgttcatgctcgtgaattaattttcttacatcttagtatgatgacaaaatttgtacaaaaatattgatctgataa |
34582951 |
T |
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| Q |
136 |
ctatattgatttagttgagaacacattttcatatccactttttaagtctcgtttccttgaacaatccgcttatctgatgatagtaacaaacatgcaaaat |
235 |
Q |
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| T |
34582950 |
ctat--tgatttagttgagaacacattttcatatccactttttaagtcttgtttccttgaacaatccgcttatctgatgatagtaacaaacatgcaaaat |
34582853 |
T |
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| Q |
236 |
gcaccttccttctgaagccaactccctgaaggatccattttgttgccttagtgactaac |
294 |
Q |
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| T |
34582852 |
gcaccttccttctgaagccaactccctgaaggatccattttgttgcctcagtgactaac |
34582794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 34585016 - 34584907
Alignment:
| Q |
64 |
tcatgctcgtgaattaattttcttacatctt---agtatgatgacaaaatttgtacaaaaatattgatctgataactatattgatttagttgagaacaca |
160 |
Q |
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| T |
34585016 |
tcatgctcatgaagtaattttcttccatcttctgagtatgatgccaaaaattgttgaaaaatattgatctgattac--tattgattaagttgaaaacaaa |
34584919 |
T |
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| Q |
161 |
ttttcatatcca |
172 |
Q |
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| T |
34584918 |
ttttcatatcca |
34584907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 34584482 - 34584432
Alignment:
| Q |
244 |
cttctgaagccaactccctgaaggatccattttgttgccttagtgactaac |
294 |
Q |
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| T |
34584482 |
cttctgaagccaactccttgtaggatccattttgttgcctcaatgactaac |
34584432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 34584583 - 34584527
Alignment:
| Q |
172 |
actttttaagtctcgtttccttgaacaatccgcttatctgatgatagtaacaaacat |
228 |
Q |
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| T |
34584583 |
actttttaagtcctgttttcttgaacagtccacttatccgatgagagtaacaaacat |
34584527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 51201290 - 51201188
Alignment:
| Q |
63 |
ttcatgctcgtgaattaattttcttacatcttagtatgatgacaaaatttgtacaaaaatattgatctgataactatattgatttagttgagaacacatt |
162 |
Q |
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|||||| || |||| |||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||| | |||| | |||| |||||||| |
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| T |
51201290 |
ttcatgatcatgaagtaattttcttacatcttagtatgatgccaaaaattgaacaaaaatatttatctgattactat-tggattaatttgaaaacacatt |
51201192 |
T |
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| Q |
163 |
ttca |
166 |
Q |
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|||| |
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| T |
51201191 |
ttca |
51201188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 27016028 - 27016102
Alignment:
| Q |
91 |
tcttagtatgatgacaaaatttgtacaaaaatattgatctgataactatattgatttagttgagaacacattttcata |
168 |
Q |
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| T |
27016028 |
tcttagtatgatgccaaaatt-gtacaaaaatattgatttaattac--tattgattaagttgaaaacagattttcata |
27016102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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